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Aliases for GAPDHP16 Gene

Subcategory (RNA class) for GAPDHP16 Gene

lncRNA

Aliases for GAPDHP16 Gene

  • Glyceraldehyde-3-Phosphate Dehydrogenase Pseudogene 16 2 3 5
  • GAPDP16 3

External Ids for GAPDHP16 Gene

ORGUL Members for GAPDHP16 Gene

Previous HGNC Symbols for GAPDHP16 Gene

  • GAPDP16

Previous GeneCards Identifiers for GAPDHP16 Gene

  • GC21U900190
  • GC21P016147
  • GC21P001529

Summaries for GAPDHP16 Gene

GeneCards Summary for GAPDHP16 Gene

GAPDHP16 (Glyceraldehyde-3-Phosphate Dehydrogenase Pseudogene 16) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for GAPDHP16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAPDHP16 Gene

Genomics for GAPDHP16 Gene

GeneHancer (GH) Regulatory Elements for GAPDHP16 Gene

Promoters and enhancers for GAPDHP16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J014773 Enhancer 0.8 Ensembl ENCODE 600.7 -0.4 -400 0.6 CC2D1A CTCF RAD21 ARID2 REST TRIM22 EP300 SOX6 SMC3 ZNF592 GAPDHP16 SAMSN1 SAMSN1-AS1 ENSG00000226751
GH21J014776 Enhancer 0.2 Ensembl 600.7 +1.9 1900 0.4 GAPDHP16 GC21M014821
GH21J015255 Enhancer 0.2 Ensembl 5.5 +481.4 481400 1 GAPDHP16 LOC105369292 ENSG00000236471
GH21J015248 Enhancer 0.2 Ensembl 5.1 +474.6 474600 0.2 GAPDHP16 LOC105369292 ENSG00000236471
GH21J014771 Enhancer 0.4 Ensembl 0.7 -2.4 -2400 1 MNT FOXA1 SAMSN1 SAMSN1-AS1 GAPDHP16 ENSG00000226751
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAPDHP16 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAPDHP16 Gene

Genomic Locations for GAPDHP16 Gene
chr21:14,774,301-14,775,480
(GRCh38/hg38)
Size:
1,180 bases
Orientation:
Plus strand
chr21:16,146,622-16,147,801
(GRCh37/hg19)
Size:
1,180 bases
Orientation:
Plus strand

Genomic View for GAPDHP16 Gene

Genes around GAPDHP16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAPDHP16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAPDHP16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAPDHP16 Gene

Proteins for GAPDHP16 Gene

Post-translational modifications for GAPDHP16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GAPDHP16 Gene

Domains & Families for GAPDHP16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GAPDHP16 Gene

Function for GAPDHP16 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAPDHP16 Gene

Localization for GAPDHP16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAPDHP16 Gene

Pathways & Interactions for GAPDHP16 Gene

PathCards logo

SuperPathways for GAPDHP16 Gene

No Data Available

Interacting Proteins for GAPDHP16 Gene

Gene Ontology (GO) - Biological Process for GAPDHP16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAPDHP16 Gene

Drugs & Compounds for GAPDHP16 Gene

No Compound Related Data Available

Transcripts for GAPDHP16 Gene

mRNA/cDNA for GAPDHP16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GAPDHP16 Gene

No ASD Table

Relevant External Links for GAPDHP16 Gene

GeneLoc Exon Structure for
GAPDHP16
ECgene alternative splicing isoforms for
GAPDHP16

Expression for GAPDHP16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GAPDHP16 Gene

mRNA differential expression in normal tissues according to GTEx for GAPDHP16 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.3) and Brain - Cerebellum (x6.6).

NURSA nuclear receptor signaling pathways regulating expression of GAPDHP16 Gene:

GAPDHP16
genes like me logo Genes that share expression patterns with GAPDHP16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAPDHP16 Gene

Orthologs for GAPDHP16 Gene

Evolution for GAPDHP16 Gene

ENSEMBL:
Gene Tree for GAPDHP16 (if available)
TreeFam:
Gene Tree for GAPDHP16 (if available)

No data available for Orthologs for GAPDHP16 Gene

Paralogs for GAPDHP16 Gene

No data available for Paralogs for GAPDHP16 Gene

Variants for GAPDHP16 Gene

Additional Variant Information for GAPDHP16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAPDHP16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GAPDHP16 Gene

Disorders for GAPDHP16 Gene

Additional Disease Information for GAPDHP16

Genetic Association Database
(GAD)

No disorders were found for GAPDHP16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GAPDHP16 Gene

Publications for GAPDHP16 Gene

  1. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 45 58
  2. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D … Mitchell GF (BMC medical genetics 2007) 45 58

No data available for External Links for GAPDHP16 Gene

Products for GAPDHP16 Gene

Sources for GAPDHP16 Gene

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