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Aliases for GAMTP2 Gene

Subcategory (RNA class) for GAMTP2 Gene

lncRNA

Aliases for GAMTP2 Gene

  • Guanidinoacetate N-Methyltransferase Pseudogene 2 2 3 5

External Ids for GAMTP2 Gene

ORGUL Members for GAMTP2 Gene

Previous GeneCards Identifiers for GAMTP2 Gene

  • GC13M035149

Summaries for GAMTP2 Gene

GeneCards Summary for GAMTP2 Gene

GAMTP2 (Guanidinoacetate N-Methyltransferase Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for GAMTP2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAMTP2 Gene

Genomics for GAMTP2 Gene

GeneHancer (GH) Regulatory Elements for GAMTP2 Gene

Promoters and enhancers for GAMTP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J034591 Enhancer 0.4 Ensembl ENCODE 0.4 -17.3 -17257 1.6 GC13P034595 GAMTP2 LINC00457 ENSG00000271901 LINC02343
GH13J034469 Enhancer 1 Ensembl ENCODE 0.1 +105.4 105448 1.4 FOSL2 CREB1 ZEB2 ZNF629 REST CTBP1 CEBPB SP1 ATF3 OSR2 GAMTP2 LINC02343 LINC00457
GH13J034462 Enhancer 0.7 Ensembl ENCODE 0.1 +111.4 111401 1.9 RFX1 JUND EP300 JUN FOS GAMTP2 LINC02343 LINC00457
GH13J034522 Enhancer 0.4 Ensembl 0.2 +52.0 52048 0.2 SP1 FOSL2 GAMTP2 LINC00457 LINC02343
GH13J034458 Enhancer 0.7 Ensembl ENCODE 0.1 +115.6 115557 2.2 NFE2 GABPA POLR2A MYC MAX LINC02343 GAMTP2 LINC00457
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAMTP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAMTP2 Gene

Genomic Locations for GAMTP2 Gene
chr13:34,574,202-34,574,749
(GRCh38/hg38)
Size:
548 bases
Orientation:
Minus strand
chr13:35,148,339-35,148,886
(GRCh37/hg19)
Size:
548 bases
Orientation:
Minus strand

Genomic View for GAMTP2 Gene

Genes around GAMTP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAMTP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAMTP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAMTP2 Gene

Proteins for GAMTP2 Gene

Post-translational modifications for GAMTP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GAMTP2 Gene

Domains & Families for GAMTP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GAMTP2 Gene

Function for GAMTP2 Gene

Phenotypes From GWAS Catalog for GAMTP2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAMTP2 Gene

Localization for GAMTP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAMTP2 Gene

Pathways & Interactions for GAMTP2 Gene

PathCards logo

SuperPathways for GAMTP2 Gene

No Data Available

Interacting Proteins for GAMTP2 Gene

Gene Ontology (GO) - Biological Process for GAMTP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAMTP2 Gene

Drugs & Compounds for GAMTP2 Gene

No Compound Related Data Available

Transcripts for GAMTP2 Gene

mRNA/cDNA for GAMTP2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GAMTP2 Gene

No ASD Table

Relevant External Links for GAMTP2 Gene

GeneLoc Exon Structure for
GAMTP2
ECgene alternative splicing isoforms for
GAMTP2

Expression for GAMTP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GAMTP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of GAMTP2 Gene:

GAMTP2
genes like me logo Genes that share expression patterns with GAMTP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAMTP2 Gene

Orthologs for GAMTP2 Gene

Evolution for GAMTP2 Gene

ENSEMBL:
Gene Tree for GAMTP2 (if available)
TreeFam:
Gene Tree for GAMTP2 (if available)

No data available for Orthologs for GAMTP2 Gene

Paralogs for GAMTP2 Gene

No data available for Paralogs for GAMTP2 Gene

Variants for GAMTP2 Gene

Additional Variant Information for GAMTP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAMTP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GAMTP2 Gene

Disorders for GAMTP2 Gene

Additional Disease Information for GAMTP2

Genetic Association Database
(GAD)

No disorders were found for GAMTP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GAMTP2 Gene

Publications for GAMTP2 Gene

No publications were found for GAMTP2 Gene.

No data available for External Links for GAMTP2 Gene

Products for GAMTP2 Gene

Sources for GAMTP2 Gene

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