Aliases for GALNTL6-AS1 Gene

Data sources for GALNTL6-AS1 Gene:

Subcategory (RNA class) for GALNTL6-AS1 Gene

lncRNA

Aliases for GALNTL6-AS1 Gene

External Ids for GALNTL6-AS1 Gene

Summaries for GALNTL6-AS1 Gene

GeneCards Summary for GALNTL6-AS1 Gene

GALNTL6-AS1 (GALNTL6 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GALNTL6-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GALNTL6-AS1 Gene

Genomics for GALNTL6-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GALNTL6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J172725 Enhancer 0.8 ENCODE 250.7 +0.5 509 2.6 CEBPA FOXA1 HOMEZ KDM6A FOXA2 RARA TEAD3 BCL6 CREM FOXP1 GALNTL6-AS1 piR-42491-170 GALNT7 GALNTL6
GH04J172751 Enhancer 0.7 Ensembl 0.3 -24.6 -24622 0.6 IRF4 TRIM22 CBFB BHLHE40 STAT5A NFATC1 MTA3 BMI1 NR2F1 BACH1 GALNTL6-AS1 lnc-HMGB2-12 GALNT7 GALNTL6
GH04J172707 Enhancer 0.4 Ensembl 0.4 +19.4 19377 0.2 PKNOX1 DPF2 EP300 GALNTL6-AS1 piR-42491-170 GALNT7 GALNTL6
GH04J172708 Enhancer 0.3 Ensembl 0.4 +18.6 18577 0.6 CTBP1 RFX1 GALNTL6-AS1 piR-42491-170 GALNT7 GALNTL6
GH04J172757 Enhancer 0.4 Ensembl 0.3 -32.1 -32146 1.6 CEBPB EP300 SPI1 FOS GALNTL6-AS1 lnc-HMGB2-12 GALNT7 GALNTL6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GALNTL6-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GALNTL6-AS1 Gene

Latest Assembly
chr4:172,629,931-172,726,878
(GRCh38/hg38)
Size:
96,948 bases
Orientation:
Minus strand

Previous Assembly
chr4:173,551,083-173,648,029
(GRCh37/hg19 by Entrez Gene)
Size:
96,947 bases
Orientation:
Minus strand

Genomic View for GALNTL6-AS1 Gene

Genes around GALNTL6-AS1 on UCSC Golden Path with GeneCards custom track
GALNTL6-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
GALNTL6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GALNTL6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GALNTL6-AS1 Gene

Proteins for GALNTL6-AS1 Gene

Post-translational modifications for GALNTL6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GALNTL6-AS1 Gene

Domains & Families for GALNTL6-AS1 Gene

Gene Families for GALNTL6-AS1 Gene

genes like me logo Genes that share domains with GALNTL6-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GALNTL6-AS1 Gene

Function for GALNTL6-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GALNTL6-AS1 Gene

Localization for GALNTL6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GALNTL6-AS1 Gene

Pathways & Interactions for GALNTL6-AS1 Gene

PathCards logo

SuperPathways for GALNTL6-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GALNTL6-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GALNTL6-AS1 Gene

Drugs & Compounds for GALNTL6-AS1 Gene

No Compound Related Data Available

Transcripts for GALNTL6-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GALNTL6-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E418F_9606 lncRNA 2106 1

RefSeq: NR_125894,

URS00007E4D8D_9606 lncRNA 629 1

RefSeq: NR_125895,

URS00008B225F_9606 lncRNA 2110 3

LncBook: HSALNT0080811,

LNCipedia: lnc-HMGB2-13:1,

NONCODE: NONHSAT099210.2,

URS00009AD2CF_9606 lncRNA 634 3

LncBook: HSALNT0080810,

LNCipedia: lnc-HMGB2-13:4,

NONCODE: NONHSAT200684.1,

URS0001BD673B_9606 lncRNA 2107 1

LncBook: HSALNT0080811,

GALNTL6-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GALNTL6-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for GALNTL6-AS1 Gene

No ASD Table

Relevant External Links for GALNTL6-AS1 Gene

GeneLoc Exon Structure for
GALNTL6-AS1

Expression for GALNTL6-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GALNTL6-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GALNTL6-AS1 Gene

Orthologs for GALNTL6-AS1 Gene

No data available for Orthologs and Evolution for GALNTL6-AS1 Gene

Paralogs for GALNTL6-AS1 Gene

No data available for Paralogs for GALNTL6-AS1 Gene

Variants for GALNTL6-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for GALNTL6-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for GALNTL6-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1042e214 CNV gain 21293372
esv3603200 CNV loss 21293372

Additional Variant Information for GALNTL6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GALNTL6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GALNTL6-AS1 Gene

Disorders for GALNTL6-AS1 Gene

No disorders were found for GALNTL6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GALNTL6-AS1 Gene

Publications for GALNTL6-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for GALNTL6-AS1 Gene

Products for GALNTL6-AS1 Gene

Sources for GALNTL6-AS1 Gene