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Aliases for GALNTL6-AS1 Gene

Subcategory (RNA class) for GALNTL6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GALNTL6-AS1 Gene

  • GALNTL6 Antisense RNA 1 2 3

External Ids for GALNTL6-AS1 Gene

Summaries for GALNTL6-AS1 Gene

GeneCards Summary for GALNTL6-AS1 Gene

GALNTL6-AS1 (GALNTL6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GALNTL6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GALNTL6-AS1 Gene

Genomics for GALNTL6-AS1 Gene

GeneHancer (GH) Regulatory Elements for GALNTL6-AS1 Gene

Promoters and enhancers for GALNTL6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J172725 Enhancer 0.8 ENCODE 600.7 +0.5 509 2.6 ELF3 MAFK PPARG SP5 HMG20B RXRA CEBPA GATAD2A RXRB SP1 GALNTL6-AS1 PIR36339 GALNTL6
GH04J172751 Enhancer 0.7 Ensembl 0.3 -24.5 -24522 0.8 CREM MLLT1 ZBED1 IKZF1 BACH1 IKZF2 TRIM22 CBFB DPF2 RUNX3 GC04P172770 GALNTL6-AS1 GALNTL6
GH04J172707 Enhancer 0.5 Ensembl 0.4 +18.3 18277 2.4 SP1 CTBP1 RFX1 PKNOX1 DPF2 SMARCE1 GALNTL6-AS1 PIR36339 GALNTL6
GH04J172757 Enhancer 0.5 Ensembl 0.3 -31.9 -31946 2 CEBPB RCOR1 JUND FOS EP300 FOSL2 GC04P172770 GALNTL6-AS1 GALNTL6
GH04J172648 Enhancer 0.5 Ensembl 0.2 +78.0 77991 0.6 MAFK ZNF316 NFE2 MAFG MAFF BACH1 EMSY GALNTL6-AS1 PIR36339 GALNTL6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GALNTL6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GALNTL6-AS1 Gene

Genomic Locations for GALNTL6-AS1 Gene
chr4:172,629,932-172,726,878
(GRCh38/hg38)
Size:
96,947 bases
Orientation:
Minus strand

Genomic View for GALNTL6-AS1 Gene

Genes around GALNTL6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GALNTL6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GALNTL6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GALNTL6-AS1 Gene

Proteins for GALNTL6-AS1 Gene

Post-translational modifications for GALNTL6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GALNTL6-AS1 Gene

Domains & Families for GALNTL6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GALNTL6-AS1 Gene

Function for GALNTL6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GALNTL6-AS1 Gene

Localization for GALNTL6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GALNTL6-AS1 Gene

Pathways & Interactions for GALNTL6-AS1 Gene

PathCards logo

SuperPathways for GALNTL6-AS1 Gene

No Data Available

Interacting Proteins for GALNTL6-AS1 Gene

Gene Ontology (GO) - Biological Process for GALNTL6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GALNTL6-AS1 Gene

Drugs & Compounds for GALNTL6-AS1 Gene

No Compound Related Data Available

Transcripts for GALNTL6-AS1 Gene

mRNA/cDNA for GALNTL6-AS1 Gene

(3) Additional mRNA sequences :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GALNTL6-AS1 Gene

No ASD Table

Relevant External Links for GALNTL6-AS1 Gene

GeneLoc Exon Structure for
GALNTL6-AS1
ECgene alternative splicing isoforms for
GALNTL6-AS1

Expression for GALNTL6-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GALNTL6-AS1 Gene

Orthologs for GALNTL6-AS1 Gene

No data available for Orthologs and Evolution for GALNTL6-AS1 Gene

Paralogs for GALNTL6-AS1 Gene

No data available for Paralogs for GALNTL6-AS1 Gene

Variants for GALNTL6-AS1 Gene

Sequence variations from dbSNP and Humsavar for GALNTL6-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs10000607 -- 172,706,974(-) A/G genic_upstream_transcript_variant, intron_variant
rs1000072086 -- 172,711,847(-) G/C genic_upstream_transcript_variant, intron_variant
rs1000119433 -- 172,728,020(-) C/A upstream_transcript_variant
rs1000134062 -- 172,724,170(-) C/A genic_upstream_transcript_variant, intron_variant
rs1000150612 -- 172,647,779(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GALNTL6-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1042e214 CNV gain 21293372
esv3603200 CNV loss 21293372

Additional Variant Information for GALNTL6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GALNTL6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GALNTL6-AS1 Gene

Disorders for GALNTL6-AS1 Gene

No disorders were found for GALNTL6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GALNTL6-AS1 Gene

Publications for GALNTL6-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for GALNTL6-AS1 Gene

Products for GALNTL6-AS1 Gene

Sources for GALNTL6-AS1 Gene

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