GALNTL6-AS1 Gene (RNA Gene)

GALNTL6 Antisense RNA 1

GC04M172630
GIFtS:
8

Aliases for GALNTL6-AS1 Gene

Subcategory (RNA class) for GALNTL6-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for GALNTL6-AS1 Gene

  • GALNTL6 Antisense RNA 1 2 3
  • NONHSAG039332 92
  • HSALNG0038564 167
  • Lnc-HMGB2-13 168
  • GALNTL6-AS1 2

External Ids for GALNTL6-AS1 Gene

Summaries for GALNTL6-AS1 Gene

GeneCards Summary for GALNTL6-AS1 Gene

GALNTL6-AS1 (GALNTL6 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GALNTL6-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GALNTL6-AS1 Gene

Genomics for GALNTL6-AS1 Gene

GeneHancer (GH) Regulatory Elements for GALNTL6-AS1 Gene

Promoters and enhancers for GALNTL6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J172725 Enhancer 0.9 Ensembl ENCODE 500.7 +0.5 509 2.6 TCF12 KDM6A TCF7 FOXA1 TEAD1 TBX3 ZKSCAN8 FOXA2 FOSL2 RFX5 GALNTL6-AS1 piR-42491-170 GALNTL6
GH04J172751 Enhancer 0.8 Ensembl 0.4 -24.6 -24622 0.6 EP300 MEF2C RCOR1 TRIM22 CBFB SRF ARNT MEF2B IRF4 BMI1 GALNTL6-AS1 lnc-HMGB2-12 GALNTL6
GH04J172707 Enhancer 0.5 Ensembl 0.4 +18.9 18877 1.2 EP300 RFX1 CTBP1 PKNOX1 DPF2 GATA3 SMARCE1 SP1 GALNTL6-AS1 piR-42491-170 GALNTL6
GH04J172787 Enhancer 0.6 FANTOM5 ENCODE 0.2 -59.4 -59394 0.3 JUND ZNF384 GALNTL6-AS1 lnc-HMGB2-12 GALNTL6
GH04J172809 Enhancer 0.7 Ensembl ENCODE 0.2 -83.1 -83123 2 TEAD4 RFX1 HDAC2 YY1 NANOG TRIM28 ESR1 EP300 SP1 CTBP2 GALNTL6-AS1 lnc-HMGB2-12 GALNTL6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GALNTL6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GALNTL6-AS1 Gene

Genomic Locations for GALNTL6-AS1 Gene
chr4:172,629,932-172,726,878
(GRCh38/hg38)
Size:
96,947 bases
Orientation:
Minus strand

Genomic View for GALNTL6-AS1 Gene

Genes around GALNTL6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GALNTL6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GALNTL6-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for GALNTL6-AS1 Gene

Proteins for GALNTL6-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for GALNTL6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GALNTL6-AS1 Gene

Domains & Families for GALNTL6-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GALNTL6-AS1 Gene

Function for GALNTL6-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GALNTL6-AS1 Gene

Localization for GALNTL6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GALNTL6-AS1 Gene

Pathways & Interactions for GALNTL6-AS1 Gene

PathCards logo

SuperPathways for GALNTL6-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for GALNTL6-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GALNTL6-AS1 Gene

Drugs & Compounds for GALNTL6-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for GALNTL6-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for GALNTL6-AS1 Gene

6 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 NONCODE transcripts :
2 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GALNTL6-AS1 Gene

No ASD Table

Relevant External Links for GALNTL6-AS1 Gene

GeneLoc Exon Structure for
GALNTL6-AS1

Expression for GALNTL6-AS1 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GALNTL6-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GALNTL6-AS1 Gene

Orthologs for GALNTL6-AS1 Gene

No data available for Orthologs and Evolution for GALNTL6-AS1 Gene

Paralogs for GALNTL6-AS1 Gene

No data available for Paralogs for GALNTL6-AS1 Gene

Variants for GALNTL6-AS1 Gene

Additional dbSNP identifiers (rs#s) for GALNTL6-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for GALNTL6-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1042e214 CNV gain 21293372
esv3603200 CNV loss 21293372

Additional Variant Information for GALNTL6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GALNTL6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GALNTL6-AS1 Gene

Disorders for GALNTL6-AS1 Gene

No disorders were found for GALNTL6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GALNTL6-AS1 Gene

Publications for GALNTL6-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for GALNTL6-AS1 Gene

Products for GALNTL6-AS1 Gene

Sources for GALNTL6-AS1 Gene