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Aliases for GACAT1 Gene

Subcategory (RNA class) for GACAT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GACAT1 Gene

  • Gastric Cancer Associated Transcript 1 2 3 5
  • Gastric Cancer Associated Transcript 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 876 2 3
  • LINC00876 3

External Ids for GACAT1 Gene

Previous GeneCards Identifiers for GACAT1 Gene

  • GC02P108373
  • GC00U935454

Summaries for GACAT1 Gene

GeneCards Summary for GACAT1 Gene

GACAT1 (Gastric Cancer Associated Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GACAT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GACAT1 Gene

Genomics for GACAT1 Gene

GeneHancer (GH) Regulatory Elements for GACAT1 Gene

Promoters and enhancers for GACAT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J107809 Enhancer 1 Ensembl ENCODE 0.2 +54.8 54796 1.1 ZNF652 ZNF384 ZSCAN21 ZNF644 KAT8 PKNOX1 GATAD2A RXRB POLR2A ATF7 PIR42153 GC02P107779 GACAT1
GH02J107730 Enhancer 0.5 Ensembl 0.3 -22.9 -22944 0.5 SMARCA4 DPF2 PKNOX1 FOSL1 MNT HLF GACAT1 GC02M107701
GH02J107717 Enhancer 0.3 Ensembl 0.3 -36.2 -36211 1.4 POLR2A GC02M107701 GACAT1
GH02J107801 Enhancer 0.3 Ensembl 0.3 +47.6 47589 0.2 POLR2A PIR42153 GC02P107779 GACAT1
GH02J107810 Enhancer 0.3 Ensembl 0.2 +57.3 57289 1.2 HLF PIR42153 GC02P107779 GACAT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GACAT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GACAT1 Gene

Genomic Locations for GACAT1 Gene
chr2:107,754,112-107,822,129
(GRCh38/hg38)
Size:
68,018 bases
Orientation:
Plus strand

Genomic View for GACAT1 Gene

Genes around GACAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GACAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GACAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GACAT1 Gene

Proteins for GACAT1 Gene

Post-translational modifications for GACAT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GACAT1 Gene

Domains & Families for GACAT1 Gene

Gene Families for GACAT1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GACAT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GACAT1 Gene

Function for GACAT1 Gene

Phenotypes From GWAS Catalog for GACAT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GACAT1 Gene

Localization for GACAT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GACAT1 Gene

Pathways & Interactions for GACAT1 Gene

PathCards logo

SuperPathways for GACAT1 Gene

No Data Available

Interacting Proteins for GACAT1 Gene

Gene Ontology (GO) - Biological Process for GACAT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GACAT1 Gene

Drugs & Compounds for GACAT1 Gene

No Compound Related Data Available

Transcripts for GACAT1 Gene

mRNA/cDNA for GACAT1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GACAT1 Gene

No ASD Table

Relevant External Links for GACAT1 Gene

GeneLoc Exon Structure for
GACAT1
ECgene alternative splicing isoforms for
GACAT1

Expression for GACAT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of GACAT1 Gene:

GACAT1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GACAT1 Gene

Orthologs for GACAT1 Gene

Evolution for GACAT1 Gene

ENSEMBL:
Gene Tree for GACAT1 (if available)
TreeFam:
Gene Tree for GACAT1 (if available)

No data available for Orthologs for GACAT1 Gene

Paralogs for GACAT1 Gene

No data available for Paralogs for GACAT1 Gene

Variants for GACAT1 Gene

Sequence variations from dbSNP and Humsavar for GACAT1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000021006 -- 107,754,853(+) T/C intron_variant
rs1000035114 -- 107,803,364(+) A/G intron_variant
rs1000061900 -- 107,813,540(+) G/A/T genic_downstream_transcript_variant, intron_variant
rs1000074516 -- 107,796,589(+) A/G intron_variant
rs1000112015 -- 107,755,991(+) T/C intron_variant

Additional Variant Information for GACAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GACAT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GACAT1 Gene

Disorders for GACAT1 Gene

Additional Disease Information for GACAT1

No disorders were found for GACAT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GACAT1 Gene

Publications for GACAT1 Gene

  1. Non-coding RNAs and gastric cancer. (PMID: 24833871) Li PF … Guo JM (World journal of gastroenterology 2014) 2 3 58
  2. Decreased expression of long noncoding RNA AC096655.1-002 in gastric cancer and its clinical significance. (PMID: 23645148) Sun W … Guo J (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2013) 2 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for GACAT1 Gene

Sources for GACAT1 Gene

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