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Aliases for GABPAP Gene

Aliases for GABPAP Gene

  • GABPA Pseudogene 2 3
  • GA Binding Protein Transcription Factor Alpha Subunit Pseudogene 2 3 5
  • GA Binding Protein Transcription Factor, Beta Subunit 1, 53kDa 2 3
  • GA Binding Protein Transcription Factor, Alpha Subunit 60kDa Pseudogene 3
  • GA Binding Protein Transcription Factor, Alpha Subunit Pseudogene 2
  • E4TF1B 3
  • GABPB1 3
  • E4TF1 3

External Ids for GABPAP Gene

Previous HGNC Symbols for GABPAP Gene

  • GABPB1

Previous GeneCards Identifiers for GABPAP Gene

  • GC00U990437
  • GC07U900319
  • GC07P062749
  • GC07P062765
  • GC07Ph62414
  • GC07Ph62415
  • GC21P026030
  • GC07Ph62416
  • GC15M048357
  • GC07P062990
  • GC07P063354
  • GC07P063357
  • GC07P063408
  • GC07P063461
  • GC07P063898
  • GC07P063899
  • GC07P063927
  • GC07P063955
  • GC07P063991
  • GC07P064025
  • GC07P064037

Summaries for GABPAP Gene

GeneCards Summary for GABPAP Gene

GABPAP (GABPA Pseudogene) is a Pseudogene.

Additional gene information for GABPAP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GABPAP Gene

Genomics for GABPAP Gene

GeneHancer (GH) Regulatory Elements for GABPAP Gene

Promoters and enhancers for GABPAP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J064792 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 25.7 +900.9 900894 2.8 PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 ZNF2 ZBTB7B YY1 POLR2B ZNF138 ZNF273 EEF1DP4 GABPAP GTF2IP14 ERV3-1 ZNF107 ENSG00000234338 ENSG00000277206
GH07J064562 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.2 +669.7 669652 1.8 PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 ETS1 POLR2B ZNF680 ZNF107 CCT6P3 GTF2IP14 ZNF736 GABPAP ZNF117 LOC644387 BNIP3P42
GH07J063899 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE 0.4 +7.4 7392 1.7 SUZ12 MAX SIN3A BMI1 YY1 GATA3 POLR2A ZNF143 CHD2 AFF1 ENSG00000236299 ENSG00000226581 BNIP3P11 GABPAP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GABPAP on UCSC Golden Path with GeneCards custom track

Genomic Locations for GABPAP Gene

Genomic Locations for GABPAP Gene
chr7:63,893,249-63,897,910
(GRCh38/hg38)
Size:
4,662 bases
Orientation:
Plus strand
chr7:63,353,444-63,358,288
(GRCh37/hg19)
Size:
4,845 bases
Orientation:
Plus strand

Genomic View for GABPAP Gene

Genes around GABPAP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GABPAP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GABPAP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GABPAP Gene

Proteins for GABPAP Gene

Post-translational modifications for GABPAP Gene

No Post-translational modifications

No data available for DME Specific Peptides for GABPAP Gene

Domains & Families for GABPAP Gene

Suggested Antigen Peptide Sequences for GABPAP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for GABPAP Gene

Function for GABPAP Gene

Molecular function for GABPAP Gene

GENATLAS Biochemistry:
GA binding protein,alpha subunit with an ETS related domain,subunit A pseudogene,expressed in myeloid cells

Phenotypes From GWAS Catalog for GABPAP Gene

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GABPAP Gene

Localization for GABPAP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GABPAP Gene

Pathways & Interactions for GABPAP Gene

SuperPathways for GABPAP Gene

No Data Available

Interacting Proteins for GABPAP Gene

Gene Ontology (GO) - Biological Process for GABPAP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GABPAP Gene

Drugs & Compounds for GABPAP Gene

No Compound Related Data Available

Transcripts for GABPAP Gene

mRNA/cDNA for GABPAP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GABPAP Gene

No ASD Table

Relevant External Links for GABPAP Gene

GeneLoc Exon Structure for
GABPAP
ECgene alternative splicing isoforms for
GABPAP

Expression for GABPAP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GABPAP Gene

NURSA nuclear receptor signaling pathways regulating expression of GABPAP Gene:

GABPAP
genes like me logo Genes that share expression patterns with GABPAP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GABPAP Gene

Orthologs for GABPAP Gene

Evolution for GABPAP Gene

ENSEMBL:
Gene Tree for GABPAP (if available)
TreeFam:
Gene Tree for GABPAP (if available)

No data available for Orthologs for GABPAP Gene

Paralogs for GABPAP Gene

(5) SIMAP similar genes for GABPAP Gene using alignment to 1 proteins:

  • Q53FW7_HUMAN
genes like me logo Genes that share paralogs with GABPAP: view

No data available for Paralogs for GABPAP Gene

Variants for GABPAP Gene

Additional Variant Information for GABPAP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GABPAP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GABPAP Gene

Disorders for GABPAP Gene

No disorders were found for GABPAP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GABPAP Gene

Publications for GABPAP Gene

  1. Characterization and localization to chromosome 7 of psihGABPalpha, a human processed pseudogene related to the ets transcription factor, hGABPalpha. (PMID: 10393246) Luo M … Rosmarin AG (Gene 1999) 2 3 58
  2. cDNA cloning of transcription factor E4TF1 subunits with Ets and notch motifs. (PMID: 8441384) Watanabe H … Handa H (Molecular and cellular biology 1993) 2 3 58
  3. Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval. (PMID: 23459443) Avery CL … Psaty BM (The pharmacogenomics journal 2014) 3 58
  4. Regional mapping of two subunits of transcription factor E4TF1 to human chromosome. (PMID: 7737900) Sawada J … Yoshida MC (Japanese journal of cancer research : Gann 1995) 3 58
  5. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PMID: 8125298) Maruyama K … Sugano S (Gene 1994) 3 58

Products for GABPAP Gene

Sources for GABPAP Gene

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