Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FZD4-DT Gene

Subcategory (RNA class) for FZD4-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FZD4-DT Gene

  • FZD4 Divergent Transcript 2 3
  • Novel Transcript 5
  • AP001528.1 5

External Ids for FZD4-DT Gene

Summaries for FZD4-DT Gene

GeneCards Summary for FZD4-DT Gene

FZD4-DT (FZD4 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with FZD4-DT include Exudative Vitreoretinopathy.

Additional gene information for FZD4-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FZD4-DT Gene

Genomics for FZD4-DT Gene

GeneHancer (GH) Regulatory Elements for FZD4-DT Gene

Promoters and enhancers for FZD4-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J086953 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 600.7 -1.1 -1092 5.6 CC2D1A ZFX ELF3 CBFA2T2 ZNF148 POLR2A MLLT1 CEBPG GTF2F1 CDC5L FZD4 FZD4-DT TMEM135 CCDC81 ENSG00000255471 ME3 PRSS23
GH11J086998 Enhancer 1.2 Ensembl ENCODE 9.6 +44.5 44489 2.9 ZNF652 CC2D1A ELF3 CBFA2T2 RERE TFE3 TRIM24 HNF1A PPARG SP5 EED LOC100420680 FZD4-DT CCDC81 GC11P086992 GC11M086989
GH11J086937 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 6 -15.0 -15034 5.5 ZNF652 ZFX CTCF ELF3 ZKSCAN8 MLLT1 CEBPG RERE BACH1 TFE3 CCDC81 FZD4-DT ENSG00000255471 TMEM135 FZD4 PRSS23
GH11J087004 Enhancer 0.9 ENCODE 9.4 +49.7 49733 1 ZNF652 ELF3 CEBPG RERE ZNF24 TFE3 SP1 HNF1A PPARG SP5 FZD4-DT GC11P086992 GC11M086989
GH11J086997 Enhancer 0.9 Ensembl ENCODE 9.4 +41.8 41796 0.4 CBFA2T2 SMARCA4 DPF2 PKNOX1 ZNF316 SOX13 EP300 SOX6 CTBP1 GATAD2A FZD4-DT GC11P086992 GC11M086989
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FZD4-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for FZD4-DT Gene

Genomic Locations for FZD4-DT Gene
chr11:86,955,619-87,000,959
(GRCh38/hg38)
Size:
45,341 bases
Orientation:
Plus strand
chr11:86,666,661-86,712,001
(GRCh37/hg19)
Size:
45,341 bases
Orientation:
Plus strand

Genomic View for FZD4-DT Gene

Genes around FZD4-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FZD4-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FZD4-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FZD4-DT Gene

Proteins for FZD4-DT Gene

Post-translational modifications for FZD4-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for FZD4-DT Gene

Domains & Families for FZD4-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FZD4-DT Gene

Function for FZD4-DT Gene

Phenotypes From GWAS Catalog for FZD4-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FZD4-DT Gene

Localization for FZD4-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FZD4-DT Gene

Pathways & Interactions for FZD4-DT Gene

PathCards logo

SuperPathways for FZD4-DT Gene

No Data Available

Interacting Proteins for FZD4-DT Gene

Gene Ontology (GO) - Biological Process for FZD4-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FZD4-DT Gene

Drugs & Compounds for FZD4-DT Gene

No Compound Related Data Available

Transcripts for FZD4-DT Gene

mRNA/cDNA for FZD4-DT Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Unigene Clusters for FZD4-DT Gene

Uncharacterized LOC100506368:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FZD4-DT Gene

No ASD Table

Relevant External Links for FZD4-DT Gene

GeneLoc Exon Structure for
FZD4-DT
ECgene alternative splicing isoforms for
FZD4-DT

Expression for FZD4-DT Gene

SOURCE GeneReport for Unigene cluster for FZD4-DT Gene:

Hs.559920
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FZD4-DT Gene

Orthologs for FZD4-DT Gene

Evolution for FZD4-DT Gene

ENSEMBL:
Gene Tree for FZD4-DT (if available)
TreeFam:
Gene Tree for FZD4-DT (if available)

No data available for Orthologs for FZD4-DT Gene

Paralogs for FZD4-DT Gene

No data available for Paralogs for FZD4-DT Gene

Variants for FZD4-DT Gene

Sequence variations from dbSNP and Humsavar for FZD4-DT Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1555086007 not-provided, Familial exudative vitreoretinopathy 86,955,037(+) CGCCCCCGGGCGCCCCCGGG/CGCCCCCGGG upstream_transcript_variant
rs373565387 likely-benign, Familial exudative vitreoretinopathy 86,955,038(+) G/A upstream_transcript_variant
rs532417375 likely-benign, Familial exudative vitreoretinopathy 86,955,097(+) G/T upstream_transcript_variant
rs544568108 uncertain-significance, Familial exudative vitreoretinopathy 86,955,215(+) G/A upstream_transcript_variant
rs568903306 likely-benign, Familial exudative vitreoretinopathy 86,955,347(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FZD4-DT Gene

Variant ID Type Subtype PubMed ID
esv2674017 CNV deletion 23128226
esv3627099 CNV gain 21293372
esv3627111 CNV loss 21293372
nsv1144583 CNV deletion 24896259
nsv419 CNV insertion 18451855

Additional Variant Information for FZD4-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FZD4-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FZD4-DT Gene

Disorders for FZD4-DT Gene

MalaCards: The human disease database

(1) MalaCards diseases for FZD4-DT Gene - From: GeneCards

Disorder Aliases PubMed IDs
exudative vitreoretinopathy
  • exudative vitreoretinopathy 1
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with FZD4-DT: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for FZD4-DT Gene

Publications for FZD4-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for FZD4-DT Gene

Products for FZD4-DT Gene

Sources for FZD4-DT Gene

Content
Loading form....