Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FTO-IT1 Gene

Subcategory (RNA class) for FTO-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FTO-IT1 Gene

  • FTO Intronic Transcript 1 2 3
  • FTO Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for FTO-IT1 Gene

Previous GeneCards Identifiers for FTO-IT1 Gene

  • GC16P054074

Summaries for FTO-IT1 Gene

GeneCards Summary for FTO-IT1 Gene

FTO-IT1 (FTO Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FTO-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FTO-IT1 Gene

Genomics for FTO-IT1 Gene

GeneHancer (GH) Regulatory Elements for FTO-IT1 Gene

Promoters and enhancers for FTO-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J054040 Enhancer 0.8 ENCODE 650.7 +1.3 1307 0.1 ELF3 FOXA2 ARID4B RAD21 ZNF48 RARA ZNF614 THAP11 MIXL1 NFKBIZ FTO-IT1 ENSG00000261049 FTO
GH16J054049 Enhancer 1 ENCODE dbSUPER 0.4 +11.3 11263 3.1 PKNOX1 MAX MZF1 CEBPG ZNF384 FEZF1 BCL11B ZNF335 CTBP1 POLR2A ENSG00000261049 FTO-IT1 FTO
GH16J054026 Enhancer 0.8 Ensembl ENCODE 0.4 -11.9 -11908 2.1 JUN CEBPB EP300 RFX5 FOSL1 GATA3 JUND STAT3 RCOR1 NFE2 FTO-IT1 ENSG00000260194 FTO
GH16J054053 Enhancer 0.4 ENCODE dbSUPER 0.4 +14.2 14151 0.2 ENSG00000261049 FTO-IT1 FTO
GH16J054022 Enhancer 0.4 UCNEbase 0.4 -16.7 -16650 0.3 FTO-IT1 ENSG00000260194 FTO
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FTO-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FTO-IT1 Gene

Genomic Locations for FTO-IT1 Gene
chr16:54,039,393-54,040,373
(GRCh38/hg38)
Size:
981 bases
Orientation:
Plus strand
chr16:54,073,305-54,074,638
(GRCh37/hg19)
Size:
1,334 bases
Orientation:
Plus strand

Genomic View for FTO-IT1 Gene

Genes around FTO-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FTO-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FTO-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FTO-IT1 Gene

Function for FTO-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FTO-IT1 Gene

Localization for FTO-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FTO-IT1 Gene

Pathways & Interactions for FTO-IT1 Gene

SuperPathways for FTO-IT1 Gene

No Data Available

Interacting Proteins for FTO-IT1 Gene

Gene Ontology (GO) - Biological Process for FTO-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FTO-IT1 Gene

Drugs & Compounds for FTO-IT1 Gene

No Compound Related Data Available

Transcripts for FTO-IT1 Gene

mRNA/cDNA for FTO-IT1 Gene

(3) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for FTO-IT1 Gene

FTO intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FTO-IT1 Gene

No ASD Table

Relevant External Links for FTO-IT1 Gene

GeneLoc Exon Structure for
FTO-IT1
ECgene alternative splicing isoforms for
FTO-IT1

Expression for FTO-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FTO-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for FTO-IT1 Gene

This gene is overexpressed in Lung (x5.3).

SOURCE GeneReport for Unigene cluster for FTO-IT1 Gene:

Hs.664629
genes like me logo Genes that share expression patterns with FTO-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FTO-IT1 Gene

Orthologs for FTO-IT1 Gene

No data available for Orthologs and Evolution for FTO-IT1 Gene

Paralogs for FTO-IT1 Gene

No data available for Paralogs for FTO-IT1 Gene

Variants for FTO-IT1 Gene

Sequence variations from dbSNP and Humsavar for FTO-IT1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000833737 -- 54,037,971(+) C/T upstream_transcript_variant
rs1000928097 -- 54,038,174(+) G/A upstream_transcript_variant
rs1001221386 -- 54,039,529(+) T/C intron_variant
rs1001261922 -- 54,039,813(+) C/G non_coding_transcript_variant
rs1005404467 -- 54,038,970(+) C/T upstream_transcript_variant

Additional Variant Information for FTO-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FTO-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FTO-IT1 Gene

Disorders for FTO-IT1 Gene

Additional Disease Information for FTO-IT1

No disorders were found for FTO-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FTO-IT1 Gene

Publications for FTO-IT1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for FTO-IT1 Gene

Sources for FTO-IT1 Gene

Content
Loading form....