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Aliases for FTCD-AS1 Gene

Subcategory (RNA class) for FTCD-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FTCD-AS1 Gene

  • FTCD Antisense RNA 1 2 3 5
  • FTCD Antisense RNA 1 (Non-Protein Coding) 2 3
  • Uncharacterized Protein LOC100861507 3

External Ids for FTCD-AS1 Gene

Previous GeneCards Identifiers for FTCD-AS1 Gene

  • GC21P047572

Summaries for FTCD-AS1 Gene

GeneCards Summary for FTCD-AS1 Gene

FTCD-AS1 (FTCD Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with FTCD-AS1 include Glutamate Formiminotransferase Deficiency.

Additional gene information for FTCD-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FTCD-AS1 Gene

Genomics for FTCD-AS1 Gene

GeneHancer (GH) Regulatory Elements for FTCD-AS1 Gene

Promoters and enhancers for FTCD-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J046152 Enhancer 1 ENCODE 600.7 +2.0 2000 1.9 SP1 ZFX CTCF CC2D1A CBFA2T2 ZNF148 MLLT1 ZSCAN21 AHR ZBTB7A FTCD-AS1 MCM3AP SPATC1L ENSG00000228137 MCM3AP-AS1 DIP2A POFUT2 FTCD YBEY
GH21J046150 Enhancer 0.3 Ensembl 600.7 -1.1 -1113 0.2 ZIC2 FTCD-AS1 FTCD GC21M046946
GH21J046108 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 12.2 -41.3 -41289 2.8 ZNF680 ZBTB33 ZNF223 ZNF143 GLIS1 COL6A2 FTCD-AS1 FTCD ENSG00000223901 LSS MCM3AP-AS1 YBEY DIP2A GC21P046125
GH21J046021 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.9 -128.8 -128832 2.8 ZFX CBFA2T2 ZNF384 IKZF1 ZBTB33 ATF1 REST MGA CTBP1 MTA3 FTCD-AS1 FTCD COL6A1 LOC105372842
GH21J046027 Enhancer 1 Ensembl ENCODE dbSUPER 10.9 -123.0 -123006 2.4 NFIB RXRA ZIC2 SP1 ATF2 CREB1 TRIM28 NFIC NR2F2 ZNF189 FTCD FTCD-AS1 ENSG00000224413 COL6A1 LOC105372842
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FTCD-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FTCD-AS1 Gene

Genomic Locations for FTCD-AS1 Gene
chr21:46,151,614-46,152,647
(GRCh38/hg38)
Size:
1,034 bases
Orientation:
Plus strand
chr21:47,571,528-47,572,561
(GRCh37/hg19)
Size:
1,034 bases
Orientation:
Plus strand

Genomic View for FTCD-AS1 Gene

Genes around FTCD-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FTCD-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FTCD-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FTCD-AS1 Gene

Proteins for FTCD-AS1 Gene

Post-translational modifications for FTCD-AS1 Gene

No Post-translational modifications

Other Protein References for FTCD-AS1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for FTCD-AS1 Gene

Domains & Families for FTCD-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FTCD-AS1 Gene

Function for FTCD-AS1 Gene

Phenotypes From GWAS Catalog for FTCD-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FTCD-AS1 Gene

Localization for FTCD-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FTCD-AS1 Gene

Pathways & Interactions for FTCD-AS1 Gene

PathCards logo

SuperPathways for FTCD-AS1 Gene

No Data Available

Interacting Proteins for FTCD-AS1 Gene

Gene Ontology (GO) - Biological Process for FTCD-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FTCD-AS1 Gene

Drugs & Compounds for FTCD-AS1 Gene

No Compound Related Data Available

Transcripts for FTCD-AS1 Gene

mRNA/cDNA for FTCD-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FTCD-AS1 Gene

No ASD Table

Relevant External Links for FTCD-AS1 Gene

GeneLoc Exon Structure for
FTCD-AS1
ECgene alternative splicing isoforms for
FTCD-AS1

Expression for FTCD-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FTCD-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FTCD-AS1 Gene

This gene is overexpressed in Liver (x35.3) and Kidney - Cortex (x6.8).
genes like me logo Genes that share expression patterns with FTCD-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FTCD-AS1 Gene

Orthologs for FTCD-AS1 Gene

Evolution for FTCD-AS1 Gene

ENSEMBL:
Gene Tree for FTCD-AS1 (if available)
TreeFam:
Gene Tree for FTCD-AS1 (if available)

No data available for Orthologs for FTCD-AS1 Gene

Paralogs for FTCD-AS1 Gene

No data available for Paralogs for FTCD-AS1 Gene

Variants for FTCD-AS1 Gene

Sequence variations from dbSNP and Humsavar for FTCD-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs112148465 uncertain-significance, GLUTAMATE FORMIMINOTRANSFERASE DEFICIENCY 46,150,412(+) G/A upstream_transcript_variant
rs116089237 benign-likely-benign, benign, GLUTAMATE FORMIMINOTRANSFERASE DEFICIENCY, not specified 46,151,896(+) T/A intron_variant
rs119469015 pathogenic, GLUTAMATE FORMIMINOTRANSFERASE DEFICIENCY 46,150,129(+) C/G/T upstream_transcript_variant
rs138139105 uncertain-significance, not specified, GLUTAMATE FORMIMINOTRANSFERASE DEFICIENCY 46,151,918(+) C/T intron_variant
rs147306849 uncertain-significance, GLUTAMATE FORMIMINOTRANSFERASE DEFICIENCY 46,151,594(+) C/T coding_sequence_variant, synonymous_variant

Additional Variant Information for FTCD-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FTCD-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FTCD-AS1 Gene

Disorders for FTCD-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FTCD-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
glutamate formiminotransferase deficiency
  • formiminotransferase deficiency
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FTCD-AS1

genes like me logo Genes that share disorders with FTCD-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FTCD-AS1 Gene

Publications for FTCD-AS1 Gene

No publications were found for FTCD-AS1 Gene.

Products for FTCD-AS1 Gene

Sources for FTCD-AS1 Gene

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