Aliases for FRGCA Gene

Subcategory (RNA class) for FRGCA Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FRGCA Gene

  • FOXM1-Regulated, Gastric Cancer Associated 2 3 5
  • FRGCA 2 5 165
  • LncRNA-AP001631.9 2 3
  • Lnc-U2AF1L5-164 165
  • NONHSAG032974.2 91
  • HSALNG0133391 164

External Ids for FRGCA Gene

Previous GeneCards Identifiers for FRGCA Gene

  • GC21U900784

Summaries for FRGCA Gene

GeneCards Summary for FRGCA Gene

FRGCA (FOXM1-Regulated, Gastric Cancer Associated) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FRGCA include Gastric Cancer.

Additional gene information for FRGCA Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FRGCA Gene

Genomics for FRGCA Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FRGCA Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043141 Promoter 0.4 Ensembl 600.7 +0.1 149 0.2 VEZF1 FRGCA piR-57176-417 CRYAA ENSG00000286549 U2AF1 LOC101928369
GH21J043103 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.3 +34.2 34226 7 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 TFE3 RFX1 SIX5 U2AF1 ENSG00000286549 LOC101928369 lnc-U2AF1-1 WDR4 RRP1B PWP2 PKNOX1 NDUFV3 FRGCA
GH21J043422 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11 -284.6 -284638 11 RNF2 SP1 CREB1 GATAD2A ZBTB33 PRDM10 ZNF629 RFX1 CTCF POLR2A SIK1 U2AF1 WDR4 RRP1B ENSG00000184441 FRGCA PWP2 PKNOX1 TRAPPC10 CBS
GH21J043437 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.9 -301.4 -301407 10.5 HNRNPL CREB1 GATAD2A CTCF ATF7 TEAD4 PRDM10 REST TFE3 SOX13 LINC00319 FRGCA RRP1B SIK1 NONHSAG032984.2 LOC107987302 LINC00313 H2BS1
GH21J043360 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.9 -220.4 -220414 3.1 PKNOX1 SP1 POLR2A HDAC1 SOX6 CTCF CEBPB CTBP1 RUNX3 HES1 LINC01679 ENSG00000225637 SIK1 FRGCA CRYAA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FRGCA on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FRGCA Gene

Genomic Locations for FRGCA Gene
chr21:43,133,582-43,141,650
(GRCh38/hg38)
Size:
8,069 bases
Orientation:
Minus strand
chr21:44,560,633-44,561,202
(GRCh37/hg19)
Size:
570 bases
Orientation:
Minus strand

Genomic View for FRGCA Gene

Genes around FRGCA on UCSC Golden Path with GeneCards custom track
FRGCA in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FRGCA Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FRGCA Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FRGCA Gene

Proteins for FRGCA Gene

No data available for DME Specific Peptides for FRGCA Gene

Domains & Families for FRGCA Gene

Gene Families for FRGCA Gene

genes like me logo Genes that share domains with FRGCA: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FRGCA Gene

Function for FRGCA Gene

Phenotypes From GWAS Catalog for FRGCA Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FRGCA Gene

Localization for FRGCA Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FRGCA Gene

Pathways & Interactions for FRGCA Gene

PathCards logo

SuperPathways for FRGCA Gene

No Data Available

Gene Ontology (GO) - Biological Process for FRGCA Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FRGCA Gene

Drugs & Compounds for FRGCA Gene

No Compound Related Data Available

Transcripts for FRGCA Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FRGCA Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000058EF33_9606 lncRNA 422 4

HGNC: 51844,

RefSeq: NR_133677, NR_133678,

Ensembl: ENST00000424933 (view in UCSC) ,

LNCipedia: FRGCA:2, lnc-U2AF1L5-164:1,

URS0000D5CD69_9606 lncRNA 7503 2

LncBook: HSALNT0274182,

LNCipedia: FRGCA:5,

URS00008B6D88_9606 lncRNA 465 2

LNCipedia: FRGCA:1,

NONCODE: NONHSAT082390.2,

URS00009B0429_9606 lncRNA 452 2

LncBook: HSALNT0274184,

NONCODE: NONHSAT191549.1,

URS0000D58F94_9606 lncRNA 980 1

LNCipedia: FRGCA:3,

FRGCA in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FRGCA Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FRGCA Gene

No ASD Table

Relevant External Links for FRGCA Gene

GeneLoc Exon Structure for
FRGCA

Expression for FRGCA Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FRGCA Gene

Orthologs for FRGCA Gene

Evolution for FRGCA Gene

ENSEMBL:
Gene Tree for FRGCA (if available)
TreeFam:
Gene Tree for FRGCA (if available)

No data available for Orthologs for FRGCA Gene

Paralogs for FRGCA Gene

No data available for Paralogs for FRGCA Gene

Variants for FRGCA Gene

Additional dbSNP identifiers (rs#s) for FRGCA Gene

Additional Variant Information for FRGCA Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FRGCA

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FRGCA Gene

Disorders for FRGCA Gene

MalaCards: The human disease database

(1) MalaCards diseases for FRGCA Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
Search FRGCA in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with FRGCA: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FRGCA Gene

Publications for FRGCA Gene

  1. LncRNA-AP001631.9 promotes cell migration in gastric cancer. (PMID: 26261500) Cai H … Gao Y (International journal of clinical and experimental pathology 2015) 2 3

Products for FRGCA Gene

Sources for FRGCA Gene