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Aliases for FRGCA Gene

Subcategory (RNA class) for FRGCA Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FRGCA Gene

  • FOXM1-Regulated, Gastric Cancer Associated 2 3 5
  • LncRNA-AP001631.9 3

External Ids for FRGCA Gene

Previous GeneCards Identifiers for FRGCA Gene

  • GC21U900784

Summaries for FRGCA Gene

GeneCards Summary for FRGCA Gene

FRGCA (FOXM1-Regulated, Gastric Cancer Associated) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with FRGCA include Gastric Cancer.

Additional gene information for FRGCA Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FRGCA Gene

Genomics for FRGCA Gene

GeneHancer (GH) Regulatory Elements for FRGCA Gene

Promoters and enhancers for FRGCA Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043139 Enhancer 0.9 ENCODE 600.7 +1.9 1936 0.2 CTCF CEBPG ZSCAN21 TFE3 RAD21 KAT8 HMG20B RXRA PRDM10 CEBPA FRGCA GC21P043124 LOC101928369
GH21J043140 Enhancer 0.8 ENCODE 600.7 +1.7 1706 0.2 CEBPG ZSCAN21 TFE3 KAT8 GATAD2A ZNF143 REST NFKBIZ CTCF SP1 FRGCA GC21P043124 LOC101928369
GH21J043141 Promoter 0.6 Ensembl 600.7 -0.5 -509 0.8 VEZF1 FRGCA ENSG00000228120 LOC101928369
GH21J043105 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 11.3 +32.9 32934 5.5 HDGF ZNF652 SP1 ELF3 ZFX CTCF MNT SIX5 CBFA2T2 ZNF148 U2AF1 LOC101928369 WDR4 RRP1B PWP2 PKNOX1 NDUFV3 FRGCA ENSG00000233754 GC21P043111
GH21J043422 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 -286.2 -286176 9 SP1 NKRF POLR2A CSDE1 ZNF687 NFIB ZBTB7A YY1 SP5 CREM SIK1 RRP1B FRGCA WDR4 CBS LINC00319
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FRGCA on UCSC Golden Path with GeneCards custom track

Genomic Locations for FRGCA Gene

Genomic Locations for FRGCA Gene
chr21:43,140,523-43,141,092
(GRCh38/hg38)
Size:
570 bases
Orientation:
Minus strand
chr21:44,560,633-44,561,202
(GRCh37/hg19)
Size:
570 bases
Orientation:
Minus strand

Genomic View for FRGCA Gene

Genes around FRGCA on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FRGCA Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FRGCA Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FRGCA Gene

Proteins for FRGCA Gene

No data available for DME Specific Peptides for FRGCA Gene

Domains & Families for FRGCA Gene

Gene Families for FRGCA Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FRGCA: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FRGCA Gene

Function for FRGCA Gene

Phenotypes From GWAS Catalog for FRGCA Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FRGCA Gene

Localization for FRGCA Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FRGCA Gene

Pathways & Interactions for FRGCA Gene

PathCards logo

SuperPathways for FRGCA Gene

No Data Available

Interacting Proteins for FRGCA Gene

Gene Ontology (GO) - Biological Process for FRGCA Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FRGCA Gene

Drugs & Compounds for FRGCA Gene

No Compound Related Data Available

Transcripts for FRGCA Gene

mRNA/cDNA for FRGCA Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for FRGCA Gene

No ASD Table

Relevant External Links for FRGCA Gene

GeneLoc Exon Structure for
FRGCA
ECgene alternative splicing isoforms for
FRGCA

Expression for FRGCA Gene

NURSA nuclear receptor signaling pathways regulating expression of FRGCA Gene:

FRGCA
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FRGCA Gene

Orthologs for FRGCA Gene

Evolution for FRGCA Gene

ENSEMBL:
Gene Tree for FRGCA (if available)
TreeFam:
Gene Tree for FRGCA (if available)

No data available for Orthologs for FRGCA Gene

Paralogs for FRGCA Gene

No data available for Paralogs for FRGCA Gene

Variants for FRGCA Gene

Sequence variations from dbSNP and Humsavar for FRGCA Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000523867 -- 43,140,044(-) T/G downstream_transcript_variant
rs1001719395 -- 43,140,515(-) T/A downstream_transcript_variant
rs1003526581 -- 43,141,911(-) C/T upstream_transcript_variant
rs1004607922 -- 43,141,945(-) G/A upstream_transcript_variant
rs1009977574 -- 43,141,619(-) C/G/T upstream_transcript_variant

Additional Variant Information for FRGCA Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FRGCA

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FRGCA Gene

Disorders for FRGCA Gene

MalaCards: The human disease database

(1) MalaCards diseases for FRGCA Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
Search FRGCA in MalaCards View complete list of genes associated with diseases

Additional Disease Information for FRGCA

genes like me logo Genes that share disorders with FRGCA: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FRGCA Gene

Publications for FRGCA Gene

  1. LncRNA-AP001631.9 promotes cell migration in gastric cancer. (PMID: 26261500) Cai H … Gao Y (International journal of clinical and experimental pathology 2015) 2 3 58

Products for FRGCA Gene

Sources for FRGCA Gene

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