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Aliases for FOXP4-AS1 Gene

Subcategory (RNA class) for FOXP4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FOXP4-AS1 Gene

  • FOXP4 Antisense RNA 1 2 3 5

External Ids for FOXP4-AS1 Gene

Summaries for FOXP4-AS1 Gene

GeneCards Summary for FOXP4-AS1 Gene

FOXP4-AS1 (FOXP4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with FOXP4-AS1 include Colorectal Cancer.

Additional gene information for FOXP4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXP4-AS1 Gene

Genomics for FOXP4-AS1 Gene

GeneHancer (GH) Regulatory Elements for FOXP4-AS1 Gene

Promoters and enhancers for FOXP4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J041544 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 656.8 +1.3 1348 4.7 HDGF ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ZNF213 FOXP4 FOXP4-AS1 GC06P042630 GC06P042224 LOC101929535 GC06M041544
GH06J041576 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -29.5 -29524 3.1 HDGF PKNOX1 FOXA2 ARNT MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 UBR2 FOXP4 LOC101929535 NFYA FOXP4-AS1 TAF8 MED20 FRS3 GC06M041544 GC06P042630
GH06J041568 Enhancer 1.2 ENCODE dbSUPER 12.2 -21.1 -21058 2.7 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 ETS1 YY1 TCF12 FOXP4 FOXP4-AS1 MDFI GC06M041544 GC06P042630 GC06P042224
GH06J041448 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.9 +98.1 98063 4.2 FOXA2 ARID4B SIN3A ZNF48 ZNF121 ZNF766 GLIS2 ZNF213 KLF7 KLF13 LOC101929535 ENSG00000226454 USP49 FOXP4 FOXP4-AS1 MED20 FRS3 GC06M041477 ENSG00000280371
GH06J041517 Enhancer 1.1 ENCODE dbSUPER 12.6 +28.9 28944 4.5 PKNOX1 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 SLC30A9 NFKBIZ PAF1 FOXP4-AS1 FOXP4 NFYA TAF8 LINC01276
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FOXP4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FOXP4-AS1 Gene

Genomic Locations for FOXP4-AS1 Gene
chr6:41,494,853-41,548,621
(GRCh38/hg38)
Size:
53,769 bases
Orientation:
Minus strand
chr6:41,462,591-41,516,359
(GRCh37/hg19)
Size:
53,769 bases
Orientation:
Minus strand

Genomic View for FOXP4-AS1 Gene

Genes around FOXP4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXP4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXP4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXP4-AS1 Gene

Proteins for FOXP4-AS1 Gene

Post-translational modifications for FOXP4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXP4-AS1 Gene

Domains & Families for FOXP4-AS1 Gene

Gene Families for FOXP4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FOXP4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXP4-AS1 Gene

Function for FOXP4-AS1 Gene

Phenotypes From GWAS Catalog for FOXP4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXP4-AS1 Gene

Localization for FOXP4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXP4-AS1 Gene

Pathways & Interactions for FOXP4-AS1 Gene

SuperPathways for FOXP4-AS1 Gene

No Data Available

Interacting Proteins for FOXP4-AS1 Gene

Gene Ontology (GO) - Biological Process for FOXP4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXP4-AS1 Gene

Drugs & Compounds for FOXP4-AS1 Gene

No Compound Related Data Available

Transcripts for FOXP4-AS1 Gene

mRNA/cDNA for FOXP4-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for FOXP4-AS1 Gene

No ASD Table

Relevant External Links for FOXP4-AS1 Gene

GeneLoc Exon Structure for
FOXP4-AS1
ECgene alternative splicing isoforms for
FOXP4-AS1

Expression for FOXP4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXP4-AS1 Gene

genes like me logo Genes that share expression patterns with FOXP4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXP4-AS1 Gene

Orthologs for FOXP4-AS1 Gene

Evolution for FOXP4-AS1 Gene

ENSEMBL:
Gene Tree for FOXP4-AS1 (if available)
TreeFam:
Gene Tree for FOXP4-AS1 (if available)

No data available for Orthologs for FOXP4-AS1 Gene

Paralogs for FOXP4-AS1 Gene

No data available for Paralogs for FOXP4-AS1 Gene

Variants for FOXP4-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOXP4-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000035746 -- 41,544,351(-) A/C intron_variant
rs1000052567 -- 41,548,275(-) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000122350 -- 41,547,124(-) C/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000236609 -- 41,541,287(-) A/T intron_variant
rs1000251296 -- 41,524,848(-) G/A intron_variant

Additional Variant Information for FOXP4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXP4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FOXP4-AS1 Gene

Disorders for FOXP4-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FOXP4-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FOXP4-AS1

genes like me logo Genes that share disorders with FOXP4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FOXP4-AS1 Gene

Publications for FOXP4-AS1 Gene

  1. Long non-coding RNA FOXP4-AS1 is an unfavourable prognostic factor and regulates proliferation and apoptosis in colorectal cancer. (PMID: 27790757) Li J … Wang K (Cell proliferation 2017) 2 3 58
  2. FOXP4-AS1 participates in the development and progression of osteosarcoma by downregulating LATS1 via binding to LSD1 and EZH2. (PMID: 29859193) Yang L … Jiang C (Biochemical and biophysical research communications 2018) 3

Products for FOXP4-AS1 Gene

Sources for FOXP4-AS1 Gene

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