Aliases for FOXO6-AS1 Gene

Subcategory (RNA class) for FOXO6-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for FOXO6-AS1 Gene

  • FOXO6 Antisense RNA 1 2 3
  • Novel Transcript 5
  • NONHSAG001190 92
  • AC093151.2 5
  • Lnc-EDN2-1 168
  • FOXO6-AS1 2

External Ids for FOXO6-AS1 Gene

Additional External Ids for FOXO6-AS1 Gene

Summaries for FOXO6-AS1 Gene

GeneCards Summary for FOXO6-AS1 Gene

FOXO6-AS1 (FOXO6 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FOXO6-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FOXO6-AS1 Gene

Genomics for FOXO6-AS1 Gene

GeneHancer (GH) Regulatory Elements for FOXO6-AS1 Gene

Promoters and enhancers for FOXO6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J041380 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas dbSUPER 507.1 -1.3 -1312 4 PHF8 ZNF639 ZNF10 ZIC2 ZBTB10 POLR2A ZNF423 EP300 ATF2 EZH2 FOXO6-AS1 FOXO6 HSALNG0002949
GH01J041379 Enhancer 0.5 dbSUPER 500.7 +1.2 1175 0.4 ZBTB48 ZNF335 ZFP69B GATA3 PRDM10 GLIS2 ZNF629 ZNF692 PATZ1 ZNF600 FOXO6-AS1 FOXO6 piR-41820
GH01J041404 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 17.4 -23.8 -23778 2.2 EP300 ZSCAN5C RFX1 MXI1 ZNF341 RBM25 NFIC SMC3 POLR2A BMI1 FOXO6-AS1 FOXO6 ENSG00000235358 HSALNG0002949 HSALNG0002951
GH01J041415 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -37.3 -37343 6.3 ZNF217 CTCF JUND TEAD4 ZNF639 ZIC2 ZNF423 GABPA RFX1 KLF4 FOXO6 EDN2 FOXO6-AS1 HSALNG0002951 HSALNG0002949
GH01J041492 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 10.1 -117.8 -117799 12.3 CTCF MYC NRF1 USF1 RBAK FOS TEAD4 ZFX ZNF10 ZIC2 EXO5 EDN2 ENSG00000230881 ENSG00000230638 RIMS3 FOXO6-AS1 FOXJ3 lnc-EDN2-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FOXO6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FOXO6-AS1 Gene

Genomic Locations for FOXO6-AS1 Gene
chr1:41,375,004-41,380,923
(GRCh38/hg38)
Size:
5,920 bases
Orientation:
Minus strand

Genomic View for FOXO6-AS1 Gene

Genes around FOXO6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXO6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXO6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXO6-AS1 Gene

Proteins for FOXO6-AS1 Gene

Post-translational modifications for FOXO6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXO6-AS1 Gene

Domains & Families for FOXO6-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FOXO6-AS1 Gene

Function for FOXO6-AS1 Gene

Phenotypes From GWAS Catalog for FOXO6-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXO6-AS1 Gene

Localization for FOXO6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXO6-AS1 Gene

Pathways & Interactions for FOXO6-AS1 Gene

PathCards logo

SuperPathways for FOXO6-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for FOXO6-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FOXO6-AS1 Gene

Drugs & Compounds for FOXO6-AS1 Gene

No Compound Related Data Available

Transcripts for FOXO6-AS1 Gene

mRNA/cDNA for FOXO6-AS1 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for FOXO6-AS1 Gene

No ASD Table

Relevant External Links for FOXO6-AS1 Gene

GeneLoc Exon Structure for
FOXO6-AS1

Expression for FOXO6-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXO6-AS1 Gene

Orthologs for FOXO6-AS1 Gene

Evolution for FOXO6-AS1 Gene

ENSEMBL:
Gene Tree for FOXO6-AS1 (if available)
TreeFam:
Gene Tree for FOXO6-AS1 (if available)

No data available for Orthologs for FOXO6-AS1 Gene

Paralogs for FOXO6-AS1 Gene

No data available for Paralogs for FOXO6-AS1 Gene

Variants for FOXO6-AS1 Gene

Additional dbSNP identifiers (rs#s) for FOXO6-AS1 Gene

Additional Variant Information for FOXO6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXO6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FOXO6-AS1 Gene

Disorders for FOXO6-AS1 Gene

No disorders were found for FOXO6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FOXO6-AS1 Gene

Publications for FOXO6-AS1 Gene

No publications were found for FOXO6-AS1 Gene.

No data available for Mastermind for FOXO6-AS1 Gene

Products for FOXO6-AS1 Gene

Sources for FOXO6-AS1 Gene