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Aliases for FOXN3-AS2 Gene

Subcategory (RNA class) for FOXN3-AS2 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for FOXN3-AS2 Gene

  • FOXN3 Antisense RNA 2 2 3 5
  • FOXN3 Antisense RNA 2 (Non-Protein Coding) 2 3
  • CTD-2303B20.1 3
  • PRO1768 3

External Ids for FOXN3-AS2 Gene

ORGUL Members for FOXN3-AS2 Gene

Previous GeneCards Identifiers for FOXN3-AS2 Gene

  • GC14P090044

Summaries for FOXN3-AS2 Gene

GeneCards Summary for FOXN3-AS2 Gene

FOXN3-AS2 (FOXN3 Antisense RNA 2) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for FOXN3-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXN3-AS2 Gene

Genomics for FOXN3-AS2 Gene

GeneHancer (GH) Regulatory Elements for FOXN3-AS2 Gene

Promoters and enhancers for FOXN3-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I089576 Enhancer 0.7 ENCODE 550.8 +0.9 917 1.9 KLF1 USF1 ZNF449 MAX MZF1 ZNF335 POLR2A ZBTB20 SP3 MAZ FOXN3-AS2 RN7SKP107 FOXN3 ENSG00000252655 GC14P089586 ENSG00000259053
GH14I089578 Enhancer 0.6 Ensembl ENCODE 0.8 +2.4 2383 0.4 SCRT1 SCRT2 PRDM10 RN7SKP107 FOXN3 ENSG00000252655 FOXN3-AS2 GC14P089586 ENSG00000259053
GH14I089539 Enhancer 1 Ensembl ENCODE 0.3 -35.5 -35481 2.3 FOXA2 ZFP64 ARID4B RAD21 ZSCAN9 RARA FOS CREM MIXL1 SP5 ENSG00000252655 FOXN3 RN7SKP107 FOXN3-AS2 GC14P089486 ENSG00000259053
GH14I089509 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -65.5 -65466 2.4 HDGF PKNOX1 SMAD1 ZIC2 ZNF207 ZNF143 ATF7 IKZF2 CREM RUNX3 FOXN3 TDP1 GC14P089486 FOXN3-AS2 ENSG00000259053
GH14I089564 Enhancer 0.6 Ensembl ENCODE 0.4 -11.4 -11390 1.1 ATF7 ATF2 FOXN3 RN7SKP107 FOXN3-AS2 GC14P089486 ENSG00000259053
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FOXN3-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FOXN3-AS2 Gene

Genomic Locations for FOXN3-AS2 Gene
chr14:89,576,216-89,577,477
(GRCh38/hg38)
Size:
1,262 bases
Orientation:
Plus strand
chr14:90,042,560-90,043,821
(GRCh37/hg19)

Genomic View for FOXN3-AS2 Gene

Genes around FOXN3-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXN3-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXN3-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXN3-AS2 Gene

Proteins for FOXN3-AS2 Gene

Post-translational modifications for FOXN3-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXN3-AS2 Gene

Domains & Families for FOXN3-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXN3-AS2 Gene

Function for FOXN3-AS2 Gene

Phenotypes for FOXN3-AS2 Gene

GenomeRNAi human phenotypes for FOXN3-AS2:
genes like me logo Genes that share phenotypes with FOXN3-AS2: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXN3-AS2 Gene

Localization for FOXN3-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXN3-AS2 Gene

Pathways & Interactions for FOXN3-AS2 Gene

SuperPathways for FOXN3-AS2 Gene

No Data Available

Interacting Proteins for FOXN3-AS2 Gene

Gene Ontology (GO) - Biological Process for FOXN3-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXN3-AS2 Gene

Drugs & Compounds for FOXN3-AS2 Gene

No Compound Related Data Available

Transcripts for FOXN3-AS2 Gene

mRNA/cDNA for FOXN3-AS2 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXN3-AS2 Gene

FOXN3 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FOXN3-AS2 Gene

No ASD Table

Relevant External Links for FOXN3-AS2 Gene

GeneLoc Exon Structure for
FOXN3-AS2
ECgene alternative splicing isoforms for
FOXN3-AS2

Expression for FOXN3-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXN3-AS2 Gene

SOURCE GeneReport for Unigene cluster for FOXN3-AS2 Gene:

Hs.673124
genes like me logo Genes that share expression patterns with FOXN3-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXN3-AS2 Gene

Orthologs for FOXN3-AS2 Gene

Evolution for FOXN3-AS2 Gene

ENSEMBL:
Gene Tree for FOXN3-AS2 (if available)
TreeFam:
Gene Tree for FOXN3-AS2 (if available)

No data available for Orthologs for FOXN3-AS2 Gene

Paralogs for FOXN3-AS2 Gene

No data available for Paralogs for FOXN3-AS2 Gene

Variants for FOXN3-AS2 Gene

Sequence variations from dbSNP and Humsavar for FOXN3-AS2 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000472693 -- 89,575,911(+) G/A upstream_transcript_variant
rs1000532734 -- 89,575,716(+) T/C upstream_transcript_variant
rs1001691071 -- 89,576,245(+) C/T non_coding_transcript_variant
rs1003366525 -- 89,577,842(+) C/T downstream_transcript_variant
rs1003592511 -- 89,576,857(+) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FOXN3-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3635294 CNV gain 21293372
nsv1039774 CNV loss 25217958

Additional Variant Information for FOXN3-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXN3-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOXN3-AS2 Gene

Disorders for FOXN3-AS2 Gene

Additional Disease Information for FOXN3-AS2

No disorders were found for FOXN3-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXN3-AS2 Gene

Publications for FOXN3-AS2 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  2. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R … Weissenbach J (Nature 2003) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FOXN3-AS2 Gene

Sources for FOXN3-AS2 Gene

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