Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FOXG1-AS1 Gene

Subcategory (RNA class) for FOXG1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FOXG1-AS1 Gene

  • FOXG1 Antisense RNA 1 (Head To Head) 2 3 5
  • FOXG1 Antisense RNA 1 2
  • FOXG1-AS 3

External Ids for FOXG1-AS1 Gene

Summaries for FOXG1-AS1 Gene

GeneCards Summary for FOXG1-AS1 Gene

FOXG1-AS1 (FOXG1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FOXG1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXG1-AS1 Gene

Genomics for FOXG1-AS1 Gene

GeneHancer (GH) Regulatory Elements for FOXG1-AS1 Gene

Promoters and enhancers for FOXG1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I028764 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.4 -1367 4.2 ZNF133 SIN3A FEZF1 GLI4 ZNF2 ZNF121 GLIS2 ZNF213 ZNF143 KLF7 FOXG1-AS1 FOXG1 LINC01551
GH14I028763 Enhancer 1.1 UCNEbase dbSUPER 550.8 +1.2 1178 0.4 ZSCAN5A FEZF1 ZNF2 POLR2A ZNF366 PATZ1 ZSCAN29 ZNF600 ZBTB20 EZH2 FOXG1-AS1 FOXG1
GH14I028769 Enhancer 0.8 UCNEbase dbSUPER 0.8 -4.2 -4197 0.3 FOXA2 EZH2 FOXG1-AS1 LINC01551 FOXG1
GH14I028756 Enhancer 1.1 VISTA dbSUPER 0.4 +7.7 7651 1.6 CTCF SUZ12 ZNF644 RAD21 ZNF7 POLR2A SMC3 NR2F6 ZNF600 HOMEZ FOXG1 FOXG1-AS1 BTF3P2
GH14I028761 Enhancer 0.5 dbSUPER 0.8 +3.3 3261 2 POLR2A CEBPA ATF7 EZH2 FOXG1 FOXG1-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FOXG1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FOXG1-AS1 Gene

Genomic Locations for FOXG1-AS1 Gene
chr14:28,725,242-28,765,319
(GRCh38/hg38)
Size:
40,078 bases
Orientation:
Minus strand
chr14:29,198,289-29,234,483
(GRCh37/hg19)

Genomic View for FOXG1-AS1 Gene

Genes around FOXG1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXG1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXG1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXG1-AS1 Gene

Proteins for FOXG1-AS1 Gene

Post-translational modifications for FOXG1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXG1-AS1 Gene

Domains & Families for FOXG1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXG1-AS1 Gene

Function for FOXG1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXG1-AS1 Gene

Localization for FOXG1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXG1-AS1 Gene

Pathways & Interactions for FOXG1-AS1 Gene

SuperPathways for FOXG1-AS1 Gene

No Data Available

Interacting Proteins for FOXG1-AS1 Gene

Gene Ontology (GO) - Biological Process for FOXG1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXG1-AS1 Gene

Drugs & Compounds for FOXG1-AS1 Gene

No Compound Related Data Available

Transcripts for FOXG1-AS1 Gene

mRNA/cDNA for FOXG1-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FOXG1-AS1 Gene

No ASD Table

Relevant External Links for FOXG1-AS1 Gene

GeneLoc Exon Structure for
FOXG1-AS1
ECgene alternative splicing isoforms for
FOXG1-AS1

Expression for FOXG1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXG1-AS1 Gene

genes like me logo Genes that share expression patterns with FOXG1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXG1-AS1 Gene

Orthologs for FOXG1-AS1 Gene

Evolution for FOXG1-AS1 Gene

ENSEMBL:
Gene Tree for FOXG1-AS1 (if available)
TreeFam:
Gene Tree for FOXG1-AS1 (if available)

No data available for Orthologs for FOXG1-AS1 Gene

Paralogs for FOXG1-AS1 Gene

No data available for Paralogs for FOXG1-AS1 Gene

Variants for FOXG1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOXG1-AS1 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1057522652 likely-benign, not specified 28,767,254(-) C/G upstream_transcript_variant
rs1057523422 likely-benign, not specified 28,767,262(-) C/T upstream_transcript_variant
rs764914165 likely-benign, not specified 28,767,288(-) C/T upstream_transcript_variant
rs1000146007 -- 28,755,591(-) A/G intron_variant
rs1000164280 -- 28,726,945(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FOXG1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3603n54 CNV loss 21841781
nsv475228 CNV novel sequence insertion 20440878
nsv520282 CNV loss 19592680
nsv525536 CNV gain 19592680
nsv526536 CNV gain 19592680
nsv528509 CNV loss 19592680
nsv832757 CNV gain 17160897

Additional Variant Information for FOXG1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXG1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOXG1-AS1 Gene

Disorders for FOXG1-AS1 Gene

Additional Disease Information for FOXG1-AS1

No disorders were found for FOXG1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXG1-AS1 Gene

Publications for FOXG1-AS1 Gene

  1. Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders. (PMID: 24007600) Velmeshev D … Faghihi MA (Molecular autism 2013) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for FOXG1-AS1 Gene

Sources for FOXG1-AS1 Gene

Content
Loading form....