Aliases for FOXD3-AS1 Gene

Subcategory (RNA class) for FOXD3-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for FOXD3-AS1 Gene

  • FOXD3 Antisense RNA 1 2 3 5
  • FOXD3-AS1 2 5 165
  • FOXD3 Promoter-Associated Antisense Long Non-Coding RNA 2 3
  • FOXD3 Antisense RNA 1 (Head To Head) 2 3
  • PasFOXD3 2 3
  • NONHSAG001696.2 91
  • HSALNG0004109 164

External Ids for FOXD3-AS1 Gene

Summaries for FOXD3-AS1 Gene

GeneCards Summary for FOXD3-AS1 Gene

FOXD3-AS1 (FOXD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FOXD3-AS1 include Malignant Glioma.

Additional gene information for FOXD3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FOXD3-AS1 Gene

Genomics for FOXD3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FOXD3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J063320 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 600.7 +0.7 740 7.8 RNF2 CREB1 CTCF TEAD4 PRDM10 ZNF629 ZNF692 JUND FOXA1 PRDM1 FOXD3 FOXD3-AS1 NONHSAG001697.2 lnc-FOXD3-4 ENSG00000236674 ALG6 MIR6068
GH01J063522 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 12.6 -198.9 -198887 3.1 SP1 CREB1 GATAD2A PRDM10 REST ZNF629 TFE3 RFX1 SIX5 LEF1 ITGB3BP EFCAB7 ALG6 FOXD3-AS1 FOXD3 ENSG00000235545 ROR1 ATG4C DOCK7 ENSG00000236674
GH01J063294 Enhancer 0.9 Ensembl ENCODE dbSUPER 12.3 +29.1 29146 2.2 TEAD4 POLR2A ETS1 SIN3A NANOG SP1 CEBPB POU5F1 JUND LINC00466 FOXD3 FOXD3-AS1 ENSG00000236674 ALG6 piR-52966-001 ATG4C
GH01J063319 Enhancer 0.4 FANTOM5 0.7 +4.7 4702 0.1 POLR2A EZH2 CHD1 ZBTB33 FOXD3 FOXD3-AS1 LINC00466 ATG4C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FOXD3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FOXD3-AS1 Gene

Genomic Locations for FOXD3-AS1 Gene
chr1:63,319,650-63,324,441
(GRCh38/hg38)
Size:
4,792 bases
Orientation:
Minus strand
chr1:63,786,555-63,790,112
(GRCh37/hg19)
Size:
3,558 bases
Orientation:
Minus strand

Genomic View for FOXD3-AS1 Gene

Genes around FOXD3-AS1 on UCSC Golden Path with GeneCards custom track
FOXD3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FOXD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXD3-AS1 Gene

Proteins for FOXD3-AS1 Gene

Post-translational modifications for FOXD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXD3-AS1 Gene

Domains & Families for FOXD3-AS1 Gene

Gene Families for FOXD3-AS1 Gene

genes like me logo Genes that share domains with FOXD3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FOXD3-AS1 Gene

Function for FOXD3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXD3-AS1 Gene

Localization for FOXD3-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FOXD3-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXD3-AS1 Gene

Pathways & Interactions for FOXD3-AS1 Gene

PathCards logo

SuperPathways for FOXD3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FOXD3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FOXD3-AS1 Gene

Drugs & Compounds for FOXD3-AS1 Gene

No Compound Related Data Available

Transcripts for FOXD3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FOXD3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000056B1DC_9606 lncRNA 547 5

RefSeq: NR_121635,

Ensembl: ENST00000449386 (view in UCSC) ,

LNCipedia: FOXD3-AS1:6,

NONCODE: NONHSAT003668.2,

ENA: KF925351.1:1..547:ncRNA,

URS00000199FC_9606 lncRNA 470 5

Ensembl: ENST00000426393 (view in UCSC) ,

LncBook: HSALNT0008160,

LNCipedia: FOXD3-AS1:12,

NONCODE: NONHSAT003669.2,

ENA: KF925354.1:1..470:ncRNA,

URS000075AAAF_9606 lncRNA 963 4

HGNC: 40241,

RefSeq: NR_121634,

LncBook: HSALNT0008167,

LNCipedia: FOXD3-AS1:7,

URS000036F04B_9606 lncRNA 941 4

Ensembl: ENST00000418244 (view in UCSC) ,

LncBook: HSALNT0008168,

LNCipedia: FOXD3-AS1:8,

ENA: KF925352.1:1..941:ncRNA, KJ493778.1:1..941:ncRNA,

URS00001ECD7E_9606 lncRNA 496 4

Ensembl: ENST00000431294 (view in UCSC) ,

LncBook: HSALNT0008166,

LNCipedia: FOXD3-AS1:4,

ENA: KF925350.1:1..496:ncRNA,

FOXD3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FOXD3-AS1 Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FOXD3-AS1 Gene

No ASD Table

Relevant External Links for FOXD3-AS1 Gene

GeneLoc Exon Structure for
FOXD3-AS1

Expression for FOXD3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FOXD3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FOXD3-AS1

genes like me logo Genes that share expression patterns with FOXD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXD3-AS1 Gene

Orthologs for FOXD3-AS1 Gene

Evolution for FOXD3-AS1 Gene

ENSEMBL:
Gene Tree for FOXD3-AS1 (if available)
TreeFam:
Gene Tree for FOXD3-AS1 (if available)

No data available for Orthologs for FOXD3-AS1 Gene

Paralogs for FOXD3-AS1 Gene

No data available for Paralogs for FOXD3-AS1 Gene

Variants for FOXD3-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for FOXD3-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
775557 Benign: not provided 63,323,697(-) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for FOXD3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for FOXD3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv461672 CNV gain 19166990
nsv470714 CNV gain 18288195
nsv546433 CNV gain 21841781

Additional Variant Information for FOXD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOXD3-AS1 Gene

Disorders for FOXD3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FOXD3-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
malignant glioma
  • glial cell tumor
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with FOXD3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FOXD3-AS1 Gene

Publications for FOXD3-AS1 Gene

  1. Long noncoding RNA FOXD3-AS1 regulates oxidative stress-induced apoptosis via sponging microRNA-150. (PMID: 28655711) Zhang D … Jin Y (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2017) 2 3
  2. Down-regulation of long non-coding RNA FOXD3 antisense RNA 1 (FOXD3-AS1) inhibits cell proliferation, migration, and invasion in malignant glioma cells. (PMID: 27829996) Chen ZH … Jiang L (American journal of translational research 2016) 2 3
  3. Long noncoding RNA FOXD3-AS1 promotes colon adenocarcinoma progression and functions as a competing endogenous RNA to regulate SIRT1 by sponging miR-135a-5p. (PMID: 31058315) Wu Q … Ma J (Journal of cellular physiology 2019) 3
  4. lncRNA FOXD3-AS1 is associated with clinical progression and regulates cell migration and invasion in breast cancer. (PMID: 31017311) Guan Y … Wang O (Cell biochemistry and function 2019) 3
  5. LncRNA FOXD3-AS1 promotes proliferation, invasion and migration of cutaneous malignant melanoma via regulating miR-325/MAP3K2. (PMID: 31541886) Chen X … Pan Y (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3

Products for FOXD3-AS1 Gene

Sources for FOXD3-AS1 Gene