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FOXD3-AS1 (FOXD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FOXD3-AS1 include Malignant Glioma.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH01J063320 | Promoter/Enhancer | 1.6 | EPDnew Ensembl ENCODE | 600.7 | +0.7 | 740 | 7.8 | RNF2 CREB1 CTCF TEAD4 PRDM10 ZNF629 ZNF692 JUND FOXA1 PRDM1 | FOXD3 FOXD3-AS1 NONHSAG001697.2 lnc-FOXD3-4 ENSG00000236674 ALG6 MIR6068 | |
GH01J063522 | Promoter/Enhancer | 2.3 | EPDnew Ensembl ENCODE CraniofacialAtlas | 12.6 | -198.9 | -198887 | 3.1 | SP1 CREB1 GATAD2A PRDM10 REST ZNF629 TFE3 RFX1 SIX5 LEF1 | ITGB3BP EFCAB7 ALG6 FOXD3-AS1 FOXD3 ENSG00000235545 ROR1 ATG4C DOCK7 ENSG00000236674 | |
GH01J063294 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 12.3 | +29.1 | 29146 | 2.2 | TEAD4 POLR2A ETS1 SIN3A NANOG SP1 CEBPB POU5F1 JUND | LINC00466 FOXD3 FOXD3-AS1 ENSG00000236674 ALG6 piR-52966-001 ATG4C | |
GH01J063319 | Enhancer | 0.4 | FANTOM5 | 0.7 | +4.7 | 4702 | 0.1 | POLR2A EZH2 CHD1 ZBTB33 | FOXD3 FOXD3-AS1 LINC00466 ATG4C |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000056B1DC_9606 | lncRNA | 547 | 5 |
RefSeq: NR_121635, Ensembl: ENST00000449386 (view in UCSC) , LNCipedia: FOXD3-AS1:6, NONCODE: NONHSAT003668.2, ENA: KF925351.1:1..547:ncRNA, |
URS00000199FC_9606 | lncRNA | 470 | 5 |
Ensembl: ENST00000426393 (view in UCSC) , LncBook: HSALNT0008160, LNCipedia: FOXD3-AS1:12, NONCODE: NONHSAT003669.2, ENA: KF925354.1:1..470:ncRNA, |
URS000075AAAF_9606 | lncRNA | 963 | 4 |
HGNC: 40241, RefSeq: NR_121634, LncBook: HSALNT0008167, LNCipedia: FOXD3-AS1:7, |
URS000036F04B_9606 | lncRNA | 941 | 4 |
Ensembl: ENST00000418244 (view in UCSC) , LncBook: HSALNT0008168, LNCipedia: FOXD3-AS1:8, |
URS00001ECD7E_9606 | lncRNA | 496 | 4 |
Ensembl: ENST00000431294 (view in UCSC) , LncBook: HSALNT0008166, LNCipedia: FOXD3-AS1:4, ENA: KF925350.1:1..496:ncRNA, |
SNP ID | Clinical significance and condition | Chr 01 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
775557 | Benign: not provided | 63,323,697(-) | C/T | SYNONYMOUS_VARIANT |
Disorder | Aliases | PubMed IDs |
---|---|---|
malignant glioma |
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