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Aliases for FOXD3-AS1 Gene
Subcategory (RNA class) for FOXD3-AS1 Gene
lncRNA
Number of RNA Genes sources:
4 / 17
Aliases for FOXD3-AS1 Gene
External Ids for FOXD3-AS1 Gene
- HGNC: 40241
- Entrez Gene: 100996301
- Ensembl: ENSG00000230798
Summaries for FOXD3-AS1 Gene
GeneCards Summary for FOXD3-AS1 Gene
FOXD3-AS1 (FOXD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FOXD3-AS1 include Malignant Glioma.
Additional gene information for FOXD3-AS1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FOXD3-AS1 Gene
Genomics for FOXD3-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for FOXD3-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J063320 | Promoter/Enhancer | 1.6 | EPDnew Ensembl ENCODE | 600.7 | +0.7 | 740 | 7.8 | RNF2 CREB1 CTCF TEAD4 PRDM10 ZNF629 ZNF692 JUND FOXA1 PRDM1 | FOXD3 FOXD3-AS1 NONHSAG001697.2 lnc-FOXD3-4 ENSG00000236674 ALG6 MIR6068 | |
| GH01J063522 | Promoter/Enhancer | 2.3 | EPDnew Ensembl ENCODE CraniofacialAtlas | 12.6 | -198.9 | -198887 | 3.1 | SP1 CREB1 GATAD2A PRDM10 REST ZNF629 TFE3 RFX1 SIX5 LEF1 | ITGB3BP EFCAB7 ALG6 FOXD3-AS1 FOXD3 ENSG00000235545 ROR1 ATG4C DOCK7 ENSG00000236674 | |
| GH01J063294 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 12.3 | +29.1 | 29146 | 2.2 | TEAD4 POLR2A ETS1 SIN3A NANOG SP1 CEBPB POU5F1 JUND | LINC00466 FOXD3 FOXD3-AS1 ENSG00000236674 ALG6 piR-52966-001 ATG4C | |
| GH01J063319 | Enhancer | 0.4 | FANTOM5 | 0.7 | +4.7 | 4702 | 0.1 | POLR2A EZH2 CHD1 ZBTB33 | FOXD3 FOXD3-AS1 LINC00466 ATG4C |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around FOXD3-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for FOXD3-AS1 Gene
Genomic Locations for FOXD3-AS1 Gene
- chr1:63,319,650-63,324,441
- (GRCh38/hg38)
- Size:
- 4,792 bases
- Orientation:
- Minus strand
- chr1:63,786,555-63,790,112
- (GRCh37/hg19)
- Size:
- 3,558 bases
- Orientation:
- Minus strand
Genomic View for FOXD3-AS1 Gene
Genes around FOXD3-AS1 on UCSC Golden Path with GeneCards custom track
FOXD3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1p31.3 by HGNC
- 1p31.3 by Entrez Gene
- 1p31.3 by Ensembl
FOXD3-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FOXD3-AS1 Gene
Proteins for FOXD3-AS1 Gene
Post-translational modifications for FOXD3-AS1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for FOXD3-AS1
- Origene Custom Protein Services for FOXD3-AS1
No data available for DME Specific Peptides for FOXD3-AS1 Gene
Domains & Families for FOXD3-AS1 Gene
Gene Families for FOXD3-AS1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FOXD3-AS1 Gene
Function for FOXD3-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for FOXD3-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXD3-AS1 Gene
Localization for FOXD3-AS1 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXD3-AS1 Gene
Transcripts for FOXD3-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for FOXD3-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000056B1DC_9606 | lncRNA | 547 | 5 |
RefSeq: NR_121635, Ensembl: ENST00000449386 (view in UCSC) , LNCipedia: FOXD3-AS1:6, NONCODE: NONHSAT003668.2, ENA: KF925351.1:1..547:ncRNA, |
| URS00000199FC_9606 | lncRNA | 470 | 5 |
Ensembl: ENST00000426393 (view in UCSC) , LncBook: HSALNT0008160, LNCipedia: FOXD3-AS1:12, NONCODE: NONHSAT003669.2, ENA: KF925354.1:1..470:ncRNA, |
| URS000075AAAF_9606 | lncRNA | 963 | 4 |
HGNC: 40241, RefSeq: NR_121634, LncBook: HSALNT0008167, LNCipedia: FOXD3-AS1:7, |
| URS000036F04B_9606 | lncRNA | 941 | 4 |
Ensembl: ENST00000418244 (view in UCSC) , LncBook: HSALNT0008168, LNCipedia: FOXD3-AS1:8, |
| URS00001ECD7E_9606 | lncRNA | 496 | 4 |
Ensembl: ENST00000431294 (view in UCSC) , LncBook: HSALNT0008166, LNCipedia: FOXD3-AS1:4, ENA: KF925350.1:1..496:ncRNA, |
FOXD3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for FOXD3-AS1 Gene
- 7 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for FOXD3-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for FOXD3-AS1 Gene
- GeneLoc Exon Structure for
- FOXD3-AS1
Expression for FOXD3-AS1 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FOXD3-AS1
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXD3-AS1 Gene
Orthologs for FOXD3-AS1 Gene
No data available for Orthologs for FOXD3-AS1 Gene
Paralogs for FOXD3-AS1 Gene
No data available for Paralogs for FOXD3-AS1 Gene
Variants for FOXD3-AS1 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for FOXD3-AS1 Gene
| SNP ID | Clinical significance and condition | Chr 01 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 775557 | Benign: not provided | 63,323,697(-) | C/T | SYNONYMOUS_VARIANT |
Additional Variant Information for FOXD3-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FOXD3-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOXD3-AS1 Gene
Disorders for FOXD3-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| malignant glioma |
|
Search FOXD3-AS1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for FOXD3-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for FOXD3-AS1 Gene
Publications for FOXD3-AS1 Gene
- Long noncoding RNA FOXD3-AS1 regulates oxidative stress-induced apoptosis via sponging microRNA-150. (PMID: 28655711) Zhang D … Jin Y (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2017) 2 3
- Down-regulation of long non-coding RNA FOXD3 antisense RNA 1 (FOXD3-AS1) inhibits cell proliferation, migration, and invasion in malignant glioma cells. (PMID: 27829996) Chen ZH … Jiang L (American journal of translational research 2016) 2 3
- Long noncoding RNA FOXD3-AS1 promotes colon adenocarcinoma progression and functions as a competing endogenous RNA to regulate SIRT1 by sponging miR-135a-5p. (PMID: 31058315) Wu Q … Ma J (Journal of cellular physiology 2019) 3
- lncRNA FOXD3-AS1 is associated with clinical progression and regulates cell migration and invasion in breast cancer. (PMID: 31017311) Guan Y … Wang O (Cell biochemistry and function 2019) 3
- LncRNA FOXD3-AS1 promotes proliferation, invasion and migration of cutaneous malignant melanoma via regulating miR-325/MAP3K2. (PMID: 31541886) Chen X … Pan Y (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3
Products for FOXD3-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for FOXD3-AS1
- Origene Custom Protein Services for FOXD3-AS1
- Browse OriGene Inhibitory RNA Products For FOXD3-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for FOXD3-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For FOXD3-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
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- Browse Sino Biological Antibodies
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for FOXD3-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for FOXD3-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for FOXD3-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for FOXD3-AS1
Sources for FOXD3-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB