Aliases for FOXD2-AS1 Gene

Subcategory (RNA class) for FOXD2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for FOXD2-AS1 Gene

  • FOXD2 Adjacent Opposite Strand RNA 1 2 3 5
  • FOXD2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • FOXD2 Antisense RNA 1 (Head To Head) 2 3
  • FOXD2-AS1 2 168
  • FOXD2 Antisense RNA 1 2
  • NONHSAG001375 92
  • HSALNG0003395 167

External Ids for FOXD2-AS1 Gene

Previous GeneCards Identifiers for FOXD2-AS1 Gene

  • GC01M047899

Summaries for FOXD2-AS1 Gene

GeneCards Summary for FOXD2-AS1 Gene

FOXD2-AS1 (FOXD2 Adjacent Opposite Strand RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FOXD2-AS1 include Ulcerative Colitis and Multiple Pterygium Syndrome, Escobar Variant.

Additional gene information for FOXD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FOXD2-AS1 Gene

Genomics for FOXD2-AS1 Gene

GeneHancer (GH) Regulatory Elements for FOXD2-AS1 Gene

Promoters and enhancers for FOXD2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FOXD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FOXD2-AS1 Gene

Genomic Locations for FOXD2-AS1 Gene
chr1:47,432,132-47,434,641
(GRCh38/hg38)
Size:
2,510 bases
Orientation:
Minus strand
chr1:47,897,805-47,900,313
(GRCh37/hg19)
Size:
2,509 bases
Orientation:
Minus strand

Genomic View for FOXD2-AS1 Gene

Genes around FOXD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXD2-AS1 Gene

Proteins for FOXD2-AS1 Gene

Post-translational modifications for FOXD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXD2-AS1 Gene

Domains & Families for FOXD2-AS1 Gene

Gene Families for FOXD2-AS1 Gene

genes like me logo Genes that share domains with FOXD2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FOXD2-AS1 Gene

Function for FOXD2-AS1 Gene

Phenotypes From GWAS Catalog for FOXD2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXD2-AS1 Gene

Localization for FOXD2-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FOXD2-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXD2-AS1 Gene

Pathways & Interactions for FOXD2-AS1 Gene

PathCards logo

SuperPathways for FOXD2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for FOXD2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FOXD2-AS1 Gene

Drugs & Compounds for FOXD2-AS1 Gene

No Compound Related Data Available

Transcripts for FOXD2-AS1 Gene

mRNA/cDNA for FOXD2-AS1 Gene

4 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for FOXD2-AS1 Gene

No ASD Table

Relevant External Links for FOXD2-AS1 Gene

GeneLoc Exon Structure for
FOXD2-AS1

Expression for FOXD2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FOXD2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FOXD2-AS1 Gene

This gene is overexpressed in Colon - Transverse (x5.6), Artery - Aorta (x4.9), Nerve - Tibial (x4.6), and Artery - Tibial (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FOXD2-AS1

SOURCE GeneReport for Unigene cluster for FOXD2-AS1 Gene:

Hs.127762
genes like me logo Genes that share expression patterns with FOXD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXD2-AS1 Gene

Orthologs for FOXD2-AS1 Gene

Evolution for FOXD2-AS1 Gene

ENSEMBL:
Gene Tree for FOXD2-AS1 (if available)
TreeFam:
Gene Tree for FOXD2-AS1 (if available)

No data available for Orthologs for FOXD2-AS1 Gene

Paralogs for FOXD2-AS1 Gene

No data available for Paralogs for FOXD2-AS1 Gene

Variants for FOXD2-AS1 Gene

Additional dbSNP identifiers (rs#s) for FOXD2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for FOXD2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1001779 CNV gain 25217958
nsv950710 CNV deletion 24416366

Additional Variant Information for FOXD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FOXD2-AS1 Gene

Disorders for FOXD2-AS1 Gene

MalaCards: The human disease database

(6) MalaCards diseases for FOXD2-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
ulcerative colitis
  • left-sided ulcerative colitis
multiple pterygium syndrome, escobar variant
  • evmps
nasopharyngeal carcinoma
  • npc
bladder cancer
  • bladder cancer, somatic
esophageal cancer
  • esophageal cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FOXD2-AS1

genes like me logo Genes that share disorders with FOXD2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FOXD2-AS1 Gene

Publications for FOXD2-AS1 Gene

  1. Highly expressed long non-coding RNA FOXD2-AS1 promotes non-small cell lung cancer progression via Wnt/β-catenin signaling. (PMID: 28132805) Rong L … Lu J (Biochemical and biophysical research communications 2017) 2 3 54
  2. Long non-coding RNA FOXD2-AS1 functions as a tumor promoter in colorectal cancer by regulating EMT and Notch signaling pathway. (PMID: 28925486) Yang X … Zhou X (European review for medical and pharmacological sciences 2017) 2 3 54
  3. Long noncoding FOXD2-AS1 is activated by CREB1 and promotes cell proliferation and metastasis in glioma by sponging miR-185 through targeting AKT1. (PMID: 30553445) Dong H … Xue J (Biochemical and biophysical research communications 2019) 3 54
  4. [FOXD2-AS1 is corelated with clinicopathological parameter of laryngeal carcinoma and promote cancer cell proliferation]. (PMID: 31163553) Chen W … Yuan K (Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology, head, and neck surgery 2019) 3 54
  5. Long non‑coding RNA FOXD2‑AS1/miR‑150‑5p/PFN2 axis regulates breast cancer malignancy and tumorigenesis. (PMID: 30628646) Jiang M … Ao X (International journal of oncology 2019) 3 54

Products for FOXD2-AS1 Gene

Sources for FOXD2-AS1 Gene