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Aliases for FOXD2-AS1 Gene

Subcategory (RNA class) for FOXD2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FOXD2-AS1 Gene

  • FOXD2 Adjacent Opposite Strand RNA 1 2 3 5
  • FOXD2 Antisense RNA 1 (Non-Protein Coding) 2
  • FOXD2 Antisense RNA 1 (Head To Head) 2
  • FOXD2 Antisense RNA 1 2

External Ids for FOXD2-AS1 Gene

ORGUL Members for FOXD2-AS1 Gene

Previous GeneCards Identifiers for FOXD2-AS1 Gene

  • GC01M047899

Summaries for FOXD2-AS1 Gene

GeneCards Summary for FOXD2-AS1 Gene

FOXD2-AS1 (FOXD2 Adjacent Opposite Strand RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FOXD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXD2-AS1 Gene

Genomics for FOXD2-AS1 Gene

GeneHancer (GH) Regulatory Elements for FOXD2-AS1 Gene

Promoters and enhancers for FOXD2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I047431 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 +1.5 1516 3.4 HDGF ZNF2 RAD21 EGR1 ZNF143 ATF7 IKZF2 CREM SMARCA5 ZNF654 FOXD2-AS1 CMPK1 LINC01389 GC01M047414
GH01I047188 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 10 +243.4 243406 4.5 HDGF PKNOX1 ATF1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF48 PDZK1IP1 ENSG00000226252 TAL1 FOXE3 LINC01389 FOXD2 FOXD2-AS1 GC01M047220
GH01I047695 Enhancer 1 ENCODE dbSUPER 11.4 -263.6 -263610 4.6 FOXA2 THRB RAD21 ZBTB40 RARA YY1 RXRA CEBPB GLIS1 ZNF341 FOXD2 FOXD2-AS1 LINC01389 FOXE3 LINC01738 GC01P047709 PIR52707
GH01I047758 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 9.5 -324.6 -324556 1.6 JUN MAX RAD21 BRCA1 RFX5 ZFHX2 POLR2A NFYB SMC3 RCOR1 FOXD2 FOXD2-AS1 ENSG00000225028 ENSG00000223814 GC01M047709
GH01I047477 Enhancer 0.9 ENCODE 11.4 -43.3 -43321 1.5 PKNOX1 CLOCK FOXA2 MLX ARID4B ZNF48 YY1 SLC30A9 RXRA SP5 FOXD2-AS1 FOXD2 LINC01389 FOXE3 CYP4A22-AS1 LINC00853 ENSG00000271355 GC01M047436
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FOXD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FOXD2-AS1 Gene

Genomic Locations for FOXD2-AS1 Gene
chr1:47,432,133-47,434,641
(GRCh38/hg38)
Size:
2,509 bases
Orientation:
Minus strand
chr1:47,897,805-47,900,313
(GRCh37/hg19)

Genomic View for FOXD2-AS1 Gene

Genes around FOXD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXD2-AS1 Gene

Proteins for FOXD2-AS1 Gene

Post-translational modifications for FOXD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXD2-AS1 Gene

Domains & Families for FOXD2-AS1 Gene

Gene Families for FOXD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FOXD2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXD2-AS1 Gene

Function for FOXD2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXD2-AS1 Gene

Localization for FOXD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXD2-AS1 Gene

Pathways & Interactions for FOXD2-AS1 Gene

SuperPathways for FOXD2-AS1 Gene

No Data Available

Interacting Proteins for FOXD2-AS1 Gene

Gene Ontology (GO) - Biological Process for FOXD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXD2-AS1 Gene

Drugs & Compounds for FOXD2-AS1 Gene

No Compound Related Data Available

Transcripts for FOXD2-AS1 Gene

mRNA/cDNA for FOXD2-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXD2-AS1 Gene

FOXD2 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FOXD2-AS1 Gene

No ASD Table

Relevant External Links for FOXD2-AS1 Gene

GeneLoc Exon Structure for
FOXD2-AS1
ECgene alternative splicing isoforms for
FOXD2-AS1

Expression for FOXD2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXD2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FOXD2-AS1 Gene

This gene is overexpressed in Colon - Transverse (x5.6), Artery - Aorta (x4.9), Nerve - Tibial (x4.6), and Artery - Tibial (x4.3).

SOURCE GeneReport for Unigene cluster for FOXD2-AS1 Gene:

Hs.127762
genes like me logo Genes that share expression patterns with FOXD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXD2-AS1 Gene

Orthologs for FOXD2-AS1 Gene

Evolution for FOXD2-AS1 Gene

ENSEMBL:
Gene Tree for FOXD2-AS1 (if available)
TreeFam:
Gene Tree for FOXD2-AS1 (if available)

No data available for Orthologs for FOXD2-AS1 Gene

Paralogs for FOXD2-AS1 Gene

No data available for Paralogs for FOXD2-AS1 Gene

Variants for FOXD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOXD2-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000176777 -- 47,434,464(-) C/A non_coding_transcript_variant
rs1000566625 -- 47,433,162(-) C/T non_coding_transcript_variant
rs1000636850 -- 47,432,794(-) T/G non_coding_transcript_variant
rs1000744561 -- 47,433,572(-) G/A non_coding_transcript_variant
rs1000783235 -- 47,432,130(-) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FOXD2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1001779 CNV gain 25217958
nsv950710 CNV deletion 24416366

Additional Variant Information for FOXD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOXD2-AS1 Gene

Disorders for FOXD2-AS1 Gene

Additional Disease Information for FOXD2-AS1

No disorders were found for FOXD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXD2-AS1 Gene

Publications for FOXD2-AS1 Gene

  1. Highly expressed long non-coding RNA FOXD2-AS1 promotes non-small cell lung cancer progression via Wnt/β-catenin signaling. (PMID: 28132805) Rong L … Lu J (Biochemical and biophysical research communications 2017) 2 3 58
  2. Long non-coding RNA FOXD2-AS1 functions as a tumor promoter in colorectal cancer by regulating EMT and Notch signaling pathway. (PMID: 28925486) Yang X … Zhou X (European review for medical and pharmacological sciences 2017) 2 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Long non-coding RNA FOXD2-AS1 aggravates nasopharyngeal carcinoma carcinogenesis by modulating miR-363-5p/S100A1 pathway. (PMID: 29248577) Chen G … Yang L (Gene 2018) 3

Products for FOXD2-AS1 Gene

Sources for FOXD2-AS1 Gene

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