Aliases for FNDC1-IT1 Gene

Subcategory (RNA class) for FNDC1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for FNDC1-IT1 Gene

  • FNDC1 Intronic Transcript 1 2 3 5
  • FNDC1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • FNDC1-IT1 2 168
  • HSALNG0054731 167
  • NONHSAG045282 92

External Ids for FNDC1-IT1 Gene

Previous GeneCards Identifiers for FNDC1-IT1 Gene

  • GC00U932977
  • GC06P159662
  • GC06P159242
  • GC06P159247
  • GC06P159256

Summaries for FNDC1-IT1 Gene

GeneCards Summary for FNDC1-IT1 Gene

FNDC1-IT1 (FNDC1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FNDC1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FNDC1-IT1 Gene

Genomics for FNDC1-IT1 Gene

GeneHancer (GH) Regulatory Elements for FNDC1-IT1 Gene

Promoters and enhancers for FNDC1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J159252 Enhancer 0.9 ENCODE 0.4 +12.4 12399 1.1 EP300 CTCF ZSCAN5C TEAD4 ZNF639 ZNF10 ZIC2 ZNF423 TRIM28 TEAD1 FNDC1 FNDC1-IT1 lnc-TAGAP-5
GH06J159169 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 0.2 -70.2 -70153 3.3 CTCF ZIC2 ZBTB26 EZH2 ZEB1 ZNF341 ZBTB17 ZNF263 ZFHX2 ZNF777 FNDC1 LOC101929122 FNDC1-IT1
GH06J159217 Enhancer 0.8 Ensembl ENCODE 0.4 -23.0 -22985 0.8 CTCF MYC SMC3 RAD21 TEAD3 ZNF614 MLX MNT MAX RBM39 FNDC1 FNDC1-IT1 LOC101929122
GH06J159174 Enhancer 0.9 Ensembl ENCODE 0.2 -66.3 -66315 0.7 CTCF NRF1 REST RAD21 MYC TRIM22 EZH2 SMC3 ZFP36 GABPB1 MRPL18 LOC101929122 FNDC1 FNDC1-IT1
GH06J159202 Enhancer 0.6 Ensembl ENCODE 0.3 -36.9 -36885 2.6 BHLHE40 FOS ELF1 CEBPB FNDC1 LOC101929122 FNDC1-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FNDC1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FNDC1-IT1 Gene

Genomic Locations for FNDC1-IT1 Gene
chr6:159,240,786-159,243,329
(GRCh38/hg38)
Size:
2,544 bases
Orientation:
Plus strand
chr6:159,661,818-159,664,361
(GRCh37/hg19)
Size:
2,544 bases
Orientation:
Plus strand

Genomic View for FNDC1-IT1 Gene

Genes around FNDC1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FNDC1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FNDC1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for FNDC1-IT1 Gene

Proteins for FNDC1-IT1 Gene

Post-translational modifications for FNDC1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FNDC1-IT1 Gene

Domains & Families for FNDC1-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FNDC1-IT1 Gene

Function for FNDC1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FNDC1-IT1 Gene

Localization for FNDC1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FNDC1-IT1 Gene

Pathways & Interactions for FNDC1-IT1 Gene

PathCards logo

SuperPathways for FNDC1-IT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for FNDC1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FNDC1-IT1 Gene

Drugs & Compounds for FNDC1-IT1 Gene

No Compound Related Data Available

Transcripts for FNDC1-IT1 Gene

mRNA/cDNA for FNDC1-IT1 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FNDC1-IT1 Gene

No ASD Table

Relevant External Links for FNDC1-IT1 Gene

GeneLoc Exon Structure for
FNDC1-IT1

Expression for FNDC1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FNDC1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for FNDC1-IT1 Gene

This gene is overexpressed in Thyroid (x10.8), Nerve - Tibial (x8.0), and Pancreas (x5.9).
genes like me logo Genes that share expression patterns with FNDC1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FNDC1-IT1 Gene

Orthologs for FNDC1-IT1 Gene

Evolution for FNDC1-IT1 Gene

ENSEMBL:
Gene Tree for FNDC1-IT1 (if available)
TreeFam:
Gene Tree for FNDC1-IT1 (if available)

No data available for Orthologs for FNDC1-IT1 Gene

Paralogs for FNDC1-IT1 Gene

No data available for Paralogs for FNDC1-IT1 Gene

Variants for FNDC1-IT1 Gene

Additional Variant Information for FNDC1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FNDC1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FNDC1-IT1 Gene

Disorders for FNDC1-IT1 Gene

No disorders were found for FNDC1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FNDC1-IT1 Gene

Publications for FNDC1-IT1 Gene

No publications were found for FNDC1-IT1 Gene.

Products for FNDC1-IT1 Gene

Sources for FNDC1-IT1 Gene