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Aliases for FNDC1-IT1 Gene

Subcategory (RNA class) for FNDC1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FNDC1-IT1 Gene

  • FNDC1 Intronic Transcript 1 2 3 5
  • FNDC1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for FNDC1-IT1 Gene

Previous GeneCards Identifiers for FNDC1-IT1 Gene

  • GC00U932977
  • GC06P159662

Summaries for FNDC1-IT1 Gene

GeneCards Summary for FNDC1-IT1 Gene

FNDC1-IT1 (FNDC1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FNDC1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FNDC1-IT1 Gene

Genomics for FNDC1-IT1 Gene

GeneHancer (GH) Regulatory Elements for FNDC1-IT1 Gene

Promoters and enhancers for FNDC1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I159169 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.2 -70.0 -70037 3.1 INSM2 ZNF2 ZEB1 ZNF335 GLIS2 ZNF391 EGR2 ZNF280D ZNF398 REST FNDC1 LOC101929122 FNDC1-IT1
GH06I159252 Enhancer 0.9 ENCODE 0.4 +12.4 12399 1.1 PKNOX1 ARNT FEZF1 ZNF2 ZNF213 ZNF143 RXRA TSHZ1 ZNF488 ZNF518A FNDC1 FNDC1-IT1 ENSG00000231178
GH06I159217 Enhancer 0.6 ENCODE 0.3 -23.1 -23082 0.2 CTCF FOXA2 FOXA3 MAX MNT RAD21 TEAD3 ZNF143 MYC FNDC1-IT1 LOC101929122 FNDC1
GH06I159174 Enhancer 0.7 ENCODE 0.2 -66.3 -66332 0.2 CTCF RB1 RAD21 CC2D1A VEZF1 SMC3 ZNF143 RUNX3 ZNF654 ZNF511 MRPL18 LOC101929122 FNDC1 FNDC1-IT1
GH06I159248 Enhancer 0.2 ENCODE 0.4 +8.9 8929 1.7 FNDC1 FNDC1-IT1 ENSG00000231178
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FNDC1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FNDC1-IT1 Gene

Genomic Locations for FNDC1-IT1 Gene
chr6:159,240,786-159,243,329
(GRCh38/hg38)
Size:
2,544 bases
Orientation:
Plus strand
chr6:159,661,818-159,664,361
(GRCh37/hg19)

Genomic View for FNDC1-IT1 Gene

Genes around FNDC1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FNDC1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FNDC1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for FNDC1-IT1 Gene

Proteins for FNDC1-IT1 Gene

Post-translational modifications for FNDC1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FNDC1-IT1 Gene

Domains & Families for FNDC1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FNDC1-IT1 Gene

Function for FNDC1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FNDC1-IT1 Gene

Localization for FNDC1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FNDC1-IT1 Gene

Pathways & Interactions for FNDC1-IT1 Gene

SuperPathways for FNDC1-IT1 Gene

No Data Available

Interacting Proteins for FNDC1-IT1 Gene

Gene Ontology (GO) - Biological Process for FNDC1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FNDC1-IT1 Gene

Drugs & Compounds for FNDC1-IT1 Gene

No Compound Related Data Available

Transcripts for FNDC1-IT1 Gene

mRNA/cDNA for FNDC1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FNDC1-IT1 Gene

No ASD Table

Relevant External Links for FNDC1-IT1 Gene

GeneLoc Exon Structure for
FNDC1-IT1
ECgene alternative splicing isoforms for
FNDC1-IT1

Expression for FNDC1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FNDC1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for FNDC1-IT1 Gene

This gene is overexpressed in Thyroid (x10.8), Nerve - Tibial (x8.0), and Pancreas (x5.9).
genes like me logo Genes that share expression patterns with FNDC1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FNDC1-IT1 Gene

Orthologs for FNDC1-IT1 Gene

Evolution for FNDC1-IT1 Gene

ENSEMBL:
Gene Tree for FNDC1-IT1 (if available)
TreeFam:
Gene Tree for FNDC1-IT1 (if available)

No data available for Orthologs for FNDC1-IT1 Gene

Paralogs for FNDC1-IT1 Gene

No data available for Paralogs for FNDC1-IT1 Gene

Variants for FNDC1-IT1 Gene

Additional Variant Information for FNDC1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FNDC1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FNDC1-IT1 Gene

Disorders for FNDC1-IT1 Gene

No disorders were found for FNDC1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FNDC1-IT1 Gene

Publications for FNDC1-IT1 Gene

No publications were found for FNDC1-IT1 Gene.

Products for FNDC1-IT1 Gene

Sources for FNDC1-IT1 Gene

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