Aliases for FLVCR1-DT Gene

Subcategory (RNA class) for FLVCR1-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FLVCR1-DT Gene

  • FLVCR1 Divergent Transcript 2 3 4 5
  • FLVCR1-DT 2 5 165
  • LQK1 2 3 4
  • FLVCR1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • FLVCR1 Antisense RNA 1 (Head To Head) 2 3
  • FLVCR1 Antisense RNA 1 2 4
  • FLVCR1-AS1 3 4
  • Putative Uncharacterized Protein LQK1 4
  • Non-Protein Coding RNA 292 2
  • NONHSAG004247.2 91
  • HSALNG0010403 164
  • NCRNA00292 3

External Ids for FLVCR1-DT Gene

Previous HGNC Symbols for FLVCR1-DT Gene

  • NCRNA00292
  • FLVCR1-AS1

Summaries for FLVCR1-DT Gene

GeneCards Summary for FLVCR1-DT Gene

FLVCR1-DT (FLVCR1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FLVCR1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FLVCR1-DT Gene

Genomics for FLVCR1-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FLVCR1-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FLVCR1-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FLVCR1-DT Gene

Genomic Locations for FLVCR1-DT Gene
chr1:212,851,962-212,858,138
(GRCh38/hg38)
Size:
6,177 bases
Orientation:
Minus strand
chr1:213,025,450-213,031,480
(GRCh37/hg19)
Size:
6,031 bases
Orientation:
Minus strand

Genomic View for FLVCR1-DT Gene

Genes around FLVCR1-DT on UCSC Golden Path with GeneCards custom track
FLVCR1-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FLVCR1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLVCR1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLVCR1-DT Gene

Proteins for FLVCR1-DT Gene

  • Protein details for FLVCR1-DT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TAF5-LQK1_HUMAN
    Recommended name:
    Putative uncharacterized protein LQK1
    Protein Accession:
    Q8TAF5

    Protein attributes for FLVCR1-DT Gene

    Size:
    88 amino acids
    Molecular mass:
    10021 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FLVCR1-DT Gene

Post-translational modifications for FLVCR1-DT Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FLVCR1-DT Gene

Domains & Families for FLVCR1-DT Gene

Gene Families for FLVCR1-DT Gene

Protein Domains for FLVCR1-DT Gene

ProtoNet:
genes like me logo Genes that share domains with FLVCR1-DT: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FLVCR1-DT Gene

Function for FLVCR1-DT Gene

Phenotypes From GWAS Catalog for FLVCR1-DT Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLVCR1-DT Gene

Localization for FLVCR1-DT Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FLVCR1-DT gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLVCR1-DT Gene

Pathways & Interactions for FLVCR1-DT Gene

PathCards logo

SuperPathways for FLVCR1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for FLVCR1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FLVCR1-DT Gene

Drugs & Compounds for FLVCR1-DT Gene

No Compound Related Data Available

Transcripts for FLVCR1-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FLVCR1-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BC20_9606 lncRNA 942 5

HGNC: 39077,

RefSeq: NR_027285,

LncBook: HSALNT0021530,

LNCipedia: FLVCR1-DT:18,

NONCODE: NONHSAT009411.2,

URS000075F014_9606 lncRNA 688 4

RefSeq: NR_027286,

LncBook: HSALNT0021527,

LNCipedia: FLVCR1-DT:17,

NONCODE: NONHSAT009410.2,

URS0000E64125_9606 lncRNA 2565 1

Ensembl: ENST00000356684 (view in UCSC) ,

URS0000E6E532_9606 lncRNA 1814 1

Ensembl: ENST00000651970 (view in UCSC) ,

URS0000E7DCBC_9606 lncRNA 929 1

Ensembl: ENST00000426161 (view in UCSC) ,

FLVCR1-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FLVCR1-DT Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FLVCR1-DT Gene

No ASD Table

Relevant External Links for FLVCR1-DT Gene

GeneLoc Exon Structure for
FLVCR1-DT

Expression for FLVCR1-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FLVCR1-DT

mRNA Expression by UniProt/SwissProt for FLVCR1-DT Gene:

Q8TAF5-LQK1_HUMAN
Tissue specificity: Expressed in a wide variety of tissues.

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLVCR1-DT Gene

Orthologs for FLVCR1-DT Gene

Evolution for FLVCR1-DT Gene

ENSEMBL:
Gene Tree for FLVCR1-DT (if available)
TreeFam:
Gene Tree for FLVCR1-DT (if available)

No data available for Orthologs for FLVCR1-DT Gene

Paralogs for FLVCR1-DT Gene

No data available for Paralogs for FLVCR1-DT Gene

Variants for FLVCR1-DT Gene

Additional dbSNP identifiers (rs#s) for FLVCR1-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for FLVCR1-DT Gene

Variant ID Type Subtype PubMed ID
dgv571n100 CNV gain 25217958
dgv572n100 CNV gain 25217958
esv3891115 CNV loss 25118596
nsv1008383 CNV gain 25217958

Additional Variant Information for FLVCR1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FLVCR1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FLVCR1-DT Gene

Disorders for FLVCR1-DT Gene

No disorders were found for FLVCR1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLVCR1-DT Gene

Publications for FLVCR1-DT Gene

  1. Genomic structure and evolutionary context of the human feline leukemia virus subgroup C receptor (hFLVCR) gene: evidence for block duplications and de novo gene formation within duplicons of the hFLVCR locus. (PMID: 11943475) Lipovich L … Quigley JG (Gene 2002) 2 3 4
  2. LncRNA FLVCR1-AS1 acts as miR-513c sponge to modulate cancer cell proliferation, migration, and invasion in hepatocellular carcinoma. (PMID: 29574975) Zhang K … Chen L (Journal of cellular biochemistry 2018) 2 3
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for FLVCR1-DT Gene

Sources for FLVCR1-DT Gene