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Aliases for FLVCR1-AS1 Gene

Subcategory (RNA class) for FLVCR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FLVCR1-AS1 Gene

  • FLVCR1 Antisense RNA 1 (Head To Head) 2 3 5
  • FLVCR1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • FLVCR1 Antisense RNA 1 2 4
  • LQK1 3 4
  • Non-Protein Coding RNA 292 2
  • NCRNA00292 3

External Ids for FLVCR1-AS1 Gene

Previous HGNC Symbols for FLVCR1-AS1 Gene

  • NCRNA00292

Previous GeneCards Identifiers for FLVCR1-AS1 Gene

  • GC01M213030

Summaries for FLVCR1-AS1 Gene

GeneCards Summary for FLVCR1-AS1 Gene

FLVCR1-AS1 (FLVCR1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FLVCR1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLVCR1-AS1 Gene

Genomics for FLVCR1-AS1 Gene

GeneHancer (GH) Regulatory Elements for FLVCR1-AS1 Gene

Promoters and enhancers for FLVCR1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I212856 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 631.5 -0.9 -881 4.5 CLOCK FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC FLVCR1-AS1 FLVCR1 ANGEL2 TATDN3 SPATA45 GC01M212767 GC01P212844
GH01I212915 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 66.2 -57.8 -57834 2.8 NFIB ARID4B SIN3A RAD21 EGR1 RUNX3 EGR2 ZNF654 CEBPB ELF1 ENSG00000282718 FLVCR1-AS1 FLVCR1 TATDN3 SPATA45 VASH2 GC01M212767 GC01P212844
GH01I212789 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 33.8 +66.5 66541 4.4 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 TATDN3 NSL1 FLVCR1 FLVCR1-AS1 ANGEL2 RPL21P28 RPS28P2 ENSG00000235182 VASH2 BATF3
GH01I212906 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 41.9 -50.6 -50579 4.2 POLR2A ZBTB33 DPF2 ZKSCAN1 FLVCR1-AS1 TATDN3 FLVCR1 SPATA45 ENSG00000282718 GC01M212767 GC01P212844
GH01I212862 Enhancer 0.6 Ensembl 62.7 -4.2 -4163 0.6 ZNF146 HLF ZNF133 CEBPB ZMYM3 ZSCAN21 ZNF217 CEBPA ZNF24 MLLT1 GC01M212767 FLVCR1-AS1 FLVCR1 GC01P212844
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FLVCR1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FLVCR1-AS1 Gene

Genomic Locations for FLVCR1-AS1 Gene
chr1:212,852,108-212,858,138
(GRCh38/hg38)
Size:
6,031 bases
Orientation:
Minus strand
chr1:213,025,450-213,031,480
(GRCh37/hg19)

Genomic View for FLVCR1-AS1 Gene

Genes around FLVCR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLVCR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLVCR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLVCR1-AS1 Gene

Proteins for FLVCR1-AS1 Gene

  • Protein details for FLVCR1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TAF5-LQK1_HUMAN
    Recommended name:
    Putative uncharacterized protein LQK1
    Protein Accession:
    Q8TAF5

    Protein attributes for FLVCR1-AS1 Gene

    Size:
    88 amino acids
    Molecular mass:
    10021 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FLVCR1-AS1 Gene

Post-translational modifications for FLVCR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLVCR1-AS1 Gene

Domains & Families for FLVCR1-AS1 Gene

Protein Domains for FLVCR1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FLVCR1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLVCR1-AS1 Gene

Function for FLVCR1-AS1 Gene

Phenotypes From GWAS Catalog for FLVCR1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLVCR1-AS1 Gene

Localization for FLVCR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLVCR1-AS1 Gene

Pathways & Interactions for FLVCR1-AS1 Gene

SuperPathways for FLVCR1-AS1 Gene

No Data Available

Interacting Proteins for FLVCR1-AS1 Gene

Gene Ontology (GO) - Biological Process for FLVCR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLVCR1-AS1 Gene

Drugs & Compounds for FLVCR1-AS1 Gene

No Compound Related Data Available

Transcripts for FLVCR1-AS1 Gene

mRNA/cDNA for FLVCR1-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLVCR1-AS1 Gene

FLVCR1 antisense RNA 1 (head to head):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FLVCR1-AS1 Gene

No ASD Table

Relevant External Links for FLVCR1-AS1 Gene

GeneLoc Exon Structure for
FLVCR1-AS1
ECgene alternative splicing isoforms for
FLVCR1-AS1

Expression for FLVCR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLVCR1-AS1 Gene

SOURCE GeneReport for Unigene cluster for FLVCR1-AS1 Gene:

Hs.552649

mRNA Expression by UniProt/SwissProt for FLVCR1-AS1 Gene:

Q8TAF5-LQK1_HUMAN
Tissue specificity: Expressed in a wide variety of tissues.
genes like me logo Genes that share expression patterns with FLVCR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLVCR1-AS1 Gene

Orthologs for FLVCR1-AS1 Gene

Evolution for FLVCR1-AS1 Gene

ENSEMBL:
Gene Tree for FLVCR1-AS1 (if available)
TreeFam:
Gene Tree for FLVCR1-AS1 (if available)

No data available for Orthologs for FLVCR1-AS1 Gene

Paralogs for FLVCR1-AS1 Gene

No data available for Paralogs for FLVCR1-AS1 Gene

Variants for FLVCR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FLVCR1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1022067741 uncertain-significance, Posterior column ataxia with retinitis pigmentosa 212,858,503(-) G/C upstream_transcript_variant
rs11120047 conflicting-interpretations-of-pathogenicity, benign, not specified, Posterior column ataxia with retinitis pigmentosa 212,858,606(-) G/C/T upstream_transcript_variant
rs2201603 benign, Posterior column ataxia with retinitis pigmentosa 212,858,367(-) C/T upstream_transcript_variant
rs267606819 pathogenic, Posterior column ataxia with retinitis pigmentosa 212,859,173(-) G/A upstream_transcript_variant
rs267606820 pathogenic, Posterior column ataxia with retinitis pigmentosa 212,858,813(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FLVCR1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv571n100 CNV gain 25217958
dgv572n100 CNV gain 25217958
esv3891115 CNV loss 25118596
nsv1008383 CNV gain 25217958

Additional Variant Information for FLVCR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FLVCR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FLVCR1-AS1 Gene

Disorders for FLVCR1-AS1 Gene

Additional Disease Information for FLVCR1-AS1

No disorders were found for FLVCR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLVCR1-AS1 Gene

Publications for FLVCR1-AS1 Gene

  1. Genomic structure and evolutionary context of the human feline leukemia virus subgroup C receptor (hFLVCR) gene: evidence for block duplications and de novo gene formation within duplicons of the hFLVCR locus. (PMID: 11943475) Lipovich L … Quigley JG (Gene 2002) 2 3 4 58
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for FLVCR1-AS1 Gene

Sources for FLVCR1-AS1 Gene

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