Aliases for FLJ46906 Gene

Subcategory (RNA class) for FLJ46906 Gene

lncRNA

Aliases for FLJ46906 Gene

  • Uncharacterized LOC441172 3

External Ids for FLJ46906 Gene

Previous GeneCards Identifiers for FLJ46906 Gene

  • GC06P139055
  • GC06U901051

Summaries for FLJ46906 Gene

GeneCards Summary for FLJ46906 Gene

FLJ46906 (Uncharacterized LOC441172) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FLJ46906 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FLJ46906 Gene

Genomics for FLJ46906 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FLJ46906 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J138689 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.2 228 4.6 GATAD2A CTCF PRDM10 ZNF629 BACH1 LARP7 PRDM1 ZNF143 ZIC2 RBFOX2 ENSG00000225177 FLJ46906 NHSL1 lnc-NHSL1-4 lnc-NHSL1-2 HEBP2
GH06J138684 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -6.2 -6248 2 NFE2 ZNF316 MYNN MAFG MAFF ZNF121 EMSY RF00017-5811 FLJ46906 NHSL1 lnc-NHSL1-4 lnc-NHSL1-2 HEBP2
GH06J138697 Enhancer 0.2 Ensembl 0.4 +5.4 5433 0.2 lnc-NHSL1-2 ENSG00000225177 NHSL1 FLJ46906 CCDC28A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FLJ46906 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the FLJ46906 gene promoter:
  • CBF(2)
  • CBF-A
  • CBF-B
  • COMP1
  • CP1A
  • CUTL1
  • FOXD3
  • FOXJ2
  • FOXJ2 (long isoform)
  • NF-Y

Genomic Locations for FLJ46906 Gene

Genomic Locations for FLJ46906 Gene
chr6:138,691,668-138,697,288
(GRCh38/hg38)
Size:
5,621 bases
Orientation:
Plus strand
chr6:139,012,805-139,018,425
(GRCh37/hg19)
Size:
5,621 bases
Orientation:
Plus strand

Genomic View for FLJ46906 Gene

Genes around FLJ46906 on UCSC Golden Path with GeneCards custom track
FLJ46906 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FLJ46906 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ46906 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ46906 Gene

Proteins for FLJ46906 Gene

Post-translational modifications for FLJ46906 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ46906 Gene

Domains & Families for FLJ46906 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FLJ46906 Gene

Function for FLJ46906 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ46906 Gene

Localization for FLJ46906 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ46906 Gene

Pathways & Interactions for FLJ46906 Gene

PathCards logo

SuperPathways for FLJ46906 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FLJ46906 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FLJ46906 Gene

Drugs & Compounds for FLJ46906 Gene

No Compound Related Data Available

Transcripts for FLJ46906 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FLJ46906 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DB5F_9606 lncRNA 1001 1

RefSeq: NR_033896,

FLJ46906 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FLJ46906 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ46906 Gene

No ASD Table

Relevant External Links for FLJ46906 Gene

GeneLoc Exon Structure for
FLJ46906

Expression for FLJ46906 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ46906 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FLJ46906

SOURCE GeneReport for Unigene cluster for FLJ46906 Gene:

Hs.92290
genes like me logo Genes that share expression patterns with FLJ46906: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ46906 Gene

Orthologs for FLJ46906 Gene

No data available for Orthologs and Evolution for FLJ46906 Gene

Paralogs for FLJ46906 Gene

No data available for Paralogs for FLJ46906 Gene

Variants for FLJ46906 Gene

Additional dbSNP identifiers (rs#s) for FLJ46906 Gene

Structural Variations from Database of Genomic Variants (DGV) for FLJ46906 Gene

Variant ID Type Subtype PubMed ID
esv2752090 CNV gain 17911159
nsv1122139 CNV deletion 24896259
nsv1124123 CNV deletion 24896259
nsv1144149 CNV deletion 24896259

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for FLJ46906 Gene

Disorders for FLJ46906 Gene

Additional Disease Information for FLJ46906

Genetic Association Database
(GAD)

No disorders were found for FLJ46906 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ46906 Gene

Publications for FLJ46906 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for FLJ46906 Gene

Products for FLJ46906 Gene

Sources for FLJ46906 Gene