Aliases for FLJ45513 Gene

Data sources for FLJ45513 Gene:

RNA type for FLJ45513 Gene

lncRNA

Aliases for FLJ45513 Gene

External Ids for FLJ45513 Gene

Previous GeneCards Identifiers for FLJ45513 Gene

  • GC17P045278
  • GC17P047924

Summaries for FLJ45513 Gene

GeneCards Summary for FLJ45513 Gene

FLJ45513 (Uncharacterized LOC729220) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FLJ45513 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FLJ45513 Gene

Genomics for FLJ45513 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FLJ45513 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J049844 Enhancer 0.8 Ensembl ENCODE 250.7 +1.3 1307 5 CTCF RXRA SCRT1 ZNF664 ZNF143 SP1 RAD21 NR2F2 ZNF121 SCRT2 FLJ45513 FAM117A SPOP ENSG00000204584 TAC4
GH17J049835 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.9 -5893 3.8 TEAD3 RBM22 BHLHE40 SOX5 ELF3 HNF1A ELF1 SOX13 POLR2A TEAD1 ENSG00000204584 SGCA TMEM92 ENSG00000262837 HSALNG0117214 FLJ45513 TAC4 FAM117A KAT7
GH17J049839 Enhancer 0.3 Ensembl 0.7 -2.9 -2893 0.6 KLF1 GLIS2 ENSG00000204584 FLJ45513 TAC4 HSALNG0117214 FAM117A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FLJ45513 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for FLJ45513

Top Transcription factor binding sites by QIAGEN in the FLJ45513 gene promoter:
  • AML1a
  • ARP-1
  • HSF1 (long)
  • HSF1short
  • LyF-1
  • NF-1
  • NF-1/L
  • Roaz
  • RSRFC4
  • S8

Genomic Locations for FLJ45513 Gene

Latest Assembly
chr17:49,842,594-49,847,642
(GRCh38/hg38)
Size:
5,049 bases
Orientation:
Plus strand

Previous Assembly
chr17:47,923,248-47,925,004
(GRCh37/hg19 by Entrez Gene)
Size:
1,757 bases
Orientation:
Plus strand

Genomic View for FLJ45513 Gene

Genes around FLJ45513 on UCSC Golden Path with GeneCards custom track
FLJ45513 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FLJ45513 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ45513 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ45513 Gene

Proteins for FLJ45513 Gene

Post-translational modifications for FLJ45513 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ45513 Gene

Domains & Families for FLJ45513 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FLJ45513 Gene

Function for FLJ45513 Gene

Phenotypes From GWAS Catalog for FLJ45513 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ45513 Gene

Localization for FLJ45513 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ45513 Gene

Pathways & Interactions for FLJ45513 Gene

PathCards logo

SuperPathways for FLJ45513 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FLJ45513 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FLJ45513 Gene

Drugs & Compounds for FLJ45513 Gene

No Compound Related Data Available

Transcripts for FLJ45513 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FLJ45513 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEACBC_9606 lncRNA 929 1

RefSeq: NR_164135,

URS0000D5AE64_9606 lncRNA 724 2

LncBook: HSALNT0242234,

LNCipedia: lnc-KAT7-2:4,

URS0001BF1F5B_9606 lncRNA 721 1

LncBook: HSALNT0242234,

URS00008B557B_9606 lncRNA 453 1

LNCipedia: lnc-KAT7-2:2,

FLJ45513 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FLJ45513 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ45513 Gene

No ASD Table

Relevant External Links for FLJ45513 Gene

GeneLoc Exon Structure for
FLJ45513

Expression for FLJ45513 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ45513 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ45513 Gene

This gene is overexpressed in Whole Blood (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FLJ45513

SOURCE GeneReport for Unigene cluster for FLJ45513 Gene:

Hs.434138
genes like me logo Genes that share expression patterns with FLJ45513: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ45513 Gene

Orthologs for FLJ45513 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FLJ45513 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC746831 29
  • 97.95 (n)
Species where no ortholog for FLJ45513 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

No data available for Evolution for FLJ45513 Gene

Paralogs for FLJ45513 Gene

No data available for Paralogs for FLJ45513 Gene

Variants for FLJ45513 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FLJ45513 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for FLJ45513 Gene

Variant ID Type Subtype PubMed ID
esv25474 CNV loss 19812545
nsv819145 CNV loss 19587683
nsv821118 CNV duplication 20802225
nsv828037 CNV gain 20364138

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for FLJ45513 Gene

Disorders for FLJ45513 Gene

No disorders were found for FLJ45513 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FLJ45513 Gene

Publications for FLJ45513 Gene

No publications were found for FLJ45513 Gene.

No data available for Mastermind for FLJ45513 Gene

Products for FLJ45513 Gene

Sources for FLJ45513 Gene