FLJ42627 Gene (RNA Gene)

Uncharacterized LOC645644

GC16P003874
GIFtS:
9

Aliases for FLJ42627 Gene

Subcategory (RNA class) for FLJ42627 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for FLJ42627 Gene

  • Uncharacterized LOC645644 3
  • NONHSAG018351 94
  • Lnc-PDPK1-3 170

External Ids for FLJ42627 Gene

Previous GeneCards Identifiers for FLJ42627 Gene

  • GC16P002625
  • GC16U900928
  • GC16M002530
  • GC16P002688
  • GC16P002644
  • GC16P002717
  • GC16P003654
  • GC16P003817
  • GC16P002753
  • GC16P002772
  • GC16P002808
  • GC16P002876
  • GC16P002920
  • GC16P002958
  • GC16P003033
  • GC16P003540

Summaries for FLJ42627 Gene

GeneCards Summary for FLJ42627 Gene

FLJ42627 (Uncharacterized LOC645644) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FLJ42627 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FLJ42627 Gene

Genomics for FLJ42627 Gene

GeneHancer (GH) Regulatory Elements for FLJ42627 Gene

Promoters and enhancers for FLJ42627 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J002636 Enhancer 0.3 dbSUPER 750.6 +1.0 965 8 IKZF1 FLJ42627 piR-43286-002 piR-58609-002 PDPK2P piR-45826-002 ERVK13-1
GH16J002644 Promoter/Enhancer 0.5 Ensembl dbSUPER 0.4 +6.7 6719 0.6 ENSG00000260176 FLJ42627 lnc-KCTD5-2 ERVK13-1
GH16J002645 Promoter/Enhancer 0.5 Ensembl dbSUPER 0.4 +5.7 5719 0.2 ENSG00000260176 PDPK2P FLJ42627 ERVK13-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FLJ42627 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FLJ42627 gene promoter:
  • FOXF2
  • FOXO4
  • HSF1 (long)
  • HSF1short
  • IRF-2
  • MZF-1
  • p53
  • PPAR-gamma1
  • PPAR-gamma2
  • YY1

Genomic Locations for FLJ42627 Gene

Genomic Locations for FLJ42627 Gene
chr16:2,638,982-2,646,129
(GRCh38/hg38)
Size:
7,148 bases
Orientation:
Plus strand
chr16:2,688,983-2,696,130
(GRCh37/hg19)
Size:
7,148 bases
Orientation:
Plus strand

Genomic View for FLJ42627 Gene

Genes around FLJ42627 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ42627 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ42627 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FLJ42627 Gene

Proteins for FLJ42627 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FLJ42627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42627 Gene

Domains & Families for FLJ42627 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FLJ42627 Gene

Function for FLJ42627 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for FLJ42627

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ42627 Gene

Localization for FLJ42627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ42627 Gene

Pathways & Interactions for FLJ42627 Gene

PathCards logo

SuperPathways for FLJ42627 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FLJ42627 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ42627 Gene

Drugs & Compounds for FLJ42627 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FLJ42627 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for FLJ42627 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(3) RNACentral transcripts :
(3) LNCipedia transcripts :
(2) NONCODE transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for FLJ42627

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42627 Gene

No ASD Table

Relevant External Links for FLJ42627 Gene

GeneLoc Exon Structure for
FLJ42627

Expression for FLJ42627 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ42627 Gene

mRNA expression in normal human tissues for FLJ42627 Gene
mRNA expression by BioGPS for FLJ42627 Gene

SOURCE GeneReport for Unigene cluster for FLJ42627 Gene:

Hs.597810
genes like me logo Genes that share expression patterns with FLJ42627: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ42627 Gene

Orthologs for FLJ42627 Gene

No data available for Orthologs and Evolution for FLJ42627 Gene

Paralogs for FLJ42627 Gene

No data available for Paralogs for FLJ42627 Gene

Variants for FLJ42627 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for FLJ42627 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000774045 -- 2,643,520(+) A/T non_coding_transcript_variant
rs1000805146 -- 2,644,174(+) C/G/T non_coding_transcript_variant
rs1001904370 -- 2,642,724(+) C/T non_coding_transcript_variant
rs1002616221 -- 2,638,853(+) T/C upstream_transcript_variant
rs1002670185 -- 2,637,580(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ42627 Gene

Variant ID Type Subtype PubMed ID
dgv110n111 CNV duplication 26073780
dgv2693n100 CNV gain 25217958
dgv780e212 CNV gain 25503493
esv2421848 CNV duplication 20811451
esv2422427 CNV duplication 17116639
esv2750386 CNV deletion 23290073
esv2760067 CNV gain+loss 17122850
esv2762199 CNV gain+loss 21179565
esv2763126 CNV gain 21179565
esv29849 CNV gain+loss 19812545
esv33514 CNV gain+loss 17666407
esv3570075 CNV gain 25503493
esv3570143 CNV gain 25503493
esv3892757 CNV gain 25118596
esv8446 CNV loss 19470904
nsv1037150 CNV gain 25217958
nsv1136207 CNV deletion 24896259
nsv1140247 OTHER inversion 24896259
nsv510672 CNV deletion 20534489
nsv571214 CNV gain 21841781
nsv571216 CNV gain+loss 21841781
nsv571217 CNV loss 21841781
nsv7275 OTHER inversion 18451855
nsv827518 CNV gain 20364138
nsv827519 CNV gain 20364138
nsv833122 CNV loss 17160897
nsv833123 CNV gain+loss 17160897
nsv952904 CNV deletion 24416366
nsv977103 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for FLJ42627 Gene

Disorders for FLJ42627 Gene

No disorders were found for FLJ42627 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FLJ42627 Gene

Publications for FLJ42627 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for FLJ42627 Gene

Products for FLJ42627 Gene

Sources for FLJ42627 Gene