Aliases for FLJ42393 Gene

Subcategory (RNA class) for FLJ42393 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for FLJ42393 Gene

  • Uncharacterized LOC401105 3
  • Novel Transcript 5
  • Lnc-TPRG1-1 168
  • AC022498.2 5
  • AVPC1948 3

External Ids for FLJ42393 Gene

Previous GeneCards Identifiers for FLJ42393 Gene

  • GC03P189217
  • GC03P189379
  • GC03P187897

Summaries for FLJ42393 Gene

GeneCards Summary for FLJ42393 Gene

FLJ42393 (Uncharacterized LOC401105) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FLJ42393 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FLJ42393 Gene

Genomics for FLJ42393 Gene

GeneHancer (GH) Regulatory Elements for FLJ42393 Gene

Promoters and enhancers for FLJ42393 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J188177 Enhancer 1 Ensembl ENCODE dbSUPER 500.7 0.0 -38 4.2 ZNF217 TCF12 CUX1 CTBP1 FOXA2 CTCF FOXA1 DPF2 SCRT1 RAD21 FLJ42393 ENSG00000234238 RTP4 RF00017-4204 LPP
GH03J188169 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -8.4 -8442 4.6 EP300 FOXK2 TCF12 NCOR1 KDM6A TCF7 FOXA1 ZBTB25 SMARCC2 SKI BCL6 ENSG00000234238 SST ENSG00000228804 FLJ42393 RF00017-4204 LPP
GH03J188162 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -13.4 -13442 5 ZNF217 TCF12 JUND KLF4 RFX1 CTBP1 FOXA2 OSR2 ESRRA CTCF RF00017-4204 BCL6 TPRG1-AS1 LPP FLJ42393
GH03J188173 Enhancer 0.8 Ensembl dbSUPER 0.7 -3.5 -3543 2.4 ZIC2 CEBPB POLR2A SPI1 GATA3 ZMYM3 RAD21 RXRA SMARCA4 HNF4A RTP4 FLJ42393 RF00017-4204 LPP
GH03J188172 Enhancer 0.2 Ensembl 0.4 -5.6 -5642 0.2 FLJ42393 RF00017-4204 LPP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FLJ42393 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FLJ42393 gene promoter:
  • AML1a
  • E47
  • Egr-4
  • Evi-1
  • GATA-6
  • NRSF form 1
  • NRSF form 2
  • PPAR-gamma1
  • PPAR-gamma2
  • Tal-1beta

Genomic Locations for FLJ42393 Gene

Genomic Locations for FLJ42393 Gene
chr3:188,178,543-188,180,812
(GRCh38/hg38)
Size:
2,270 bases
Orientation:
Plus strand
chr3:187,896,331-187,898,598
(GRCh37/hg19)
Size:
2,268 bases
Orientation:
Plus strand

Genomic View for FLJ42393 Gene

Genes around FLJ42393 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ42393 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ42393 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ42393 Gene

Proteins for FLJ42393 Gene

Post-translational modifications for FLJ42393 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42393 Gene

Domains & Families for FLJ42393 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FLJ42393 Gene

Function for FLJ42393 Gene

Phenotypes From GWAS Catalog for FLJ42393 Gene

Phenotypes for FLJ42393 Gene

genes like me logo Genes that share phenotypes with FLJ42393: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ42393 Gene

Localization for FLJ42393 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ42393 Gene

Pathways & Interactions for FLJ42393 Gene

PathCards logo

SuperPathways for FLJ42393 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for FLJ42393 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FLJ42393 Gene

Drugs & Compounds for FLJ42393 Gene

No Compound Related Data Available

Transcripts for FLJ42393 Gene

mRNA/cDNA for FLJ42393 Gene

1 RNACentral transcripts :
2 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42393 Gene

No ASD Table

Relevant External Links for FLJ42393 Gene

GeneLoc Exon Structure for
FLJ42393

Expression for FLJ42393 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ42393 Gene

mRNA expression in normal human tissues for FLJ42393 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ42393 Gene

This gene is overexpressed in Heart - Left Ventricle (x13.2) and Heart - Atrial Appendage (x9.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FLJ42393

SOURCE GeneReport for Unigene cluster for FLJ42393 Gene:

Hs.679026
genes like me logo Genes that share expression patterns with FLJ42393: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ42393 Gene

Orthologs for FLJ42393 Gene

Evolution for FLJ42393 Gene

ENSEMBL:
Gene Tree for FLJ42393 (if available)
TreeFam:
Gene Tree for FLJ42393 (if available)

No data available for Orthologs for FLJ42393 Gene

Paralogs for FLJ42393 Gene

No data available for Paralogs for FLJ42393 Gene

Variants for FLJ42393 Gene

Additional dbSNP identifiers (rs#s) for FLJ42393 Gene

Structural Variations from Database of Genomic Variants (DGV) for FLJ42393 Gene

Variant ID Type Subtype PubMed ID
esv2751987 CNV gain 17911159
esv34193 CNV loss 18971310
nsv1003486 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for FLJ42393 Gene

Disorders for FLJ42393 Gene

No disorders were found for FLJ42393 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FLJ42393 Gene

Publications for FLJ42393 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for FLJ42393 Gene

Products for FLJ42393 Gene

Sources for FLJ42393 Gene