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Aliases for FLJ42102 Gene

Subcategory (RNA class) for FLJ42102 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ42102 Gene

  • Uncharacterized LOC399923 3 5

External Ids for FLJ42102 Gene

Previous GeneCards Identifiers for FLJ42102 Gene

  • GC11M070843
  • GC11M070794
  • GC11U901356
  • GC11M071096

Summaries for FLJ42102 Gene

GeneCards Summary for FLJ42102 Gene

FLJ42102 (Uncharacterized LOC399923) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ42102 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ42102 Gene

Genomics for FLJ42102 Gene

GeneHancer (GH) Regulatory Elements for FLJ42102 Gene

Promoters and enhancers for FLJ42102 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I071418 Enhancer 0.8 ENCODE dbSUPER 0.8 +4.7 4740 1.4 PKNOX1 NR2F1 EBF1 DPF2 EP300 BCL11A NFATC1 IKZF1 RUNX3 IKZF2 NADSYN1 ENSG00000254682 DHCR7 FLJ42102 SHANK2
GH11I071420 Enhancer 0.6 ENCODE 0.8 +2.8 2813 0.2 CTCF ZNF654 RXRA TRIM22 NEUROD1 REST RAD21 GATA3 IKZF1 ZNF143 FLJ42102 SHANK2
GH11I071432 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -10.2 -10176 4.6 ELF3 PKNOX1 FOXA2 ARID4B RARA YY1 SLC30A9 CREM PAF1 SMARCC1 NADSYN1 ENSG00000254682 FLJ42102 DHCR7
GH11I071421 Enhancer 0.5 dbSUPER 0.8 +2.1 2141 0.6 CTCF RXRA IKZF1 HNF4A IKZF2 ZKSCAN1 NADSYN1 ENSG00000254682 DHCR7 KRTAP5-8 FLJ42102 SHANK2
GH11I071431 Enhancer 0.7 ENCODE dbSUPER 0.4 -7.8 -7807 0.2 PKNOX1 RFX1 CEBPA CEBPB ZBTB33 PRDM10 ENSG00000254682 FLJ42102 DHCR7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FLJ42102 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FLJ42102 Gene

Genomic Locations for FLJ42102 Gene
chr11:71,382,601-71,423,423
(GRCh38/hg38)
Size:
40,823 bases
Orientation:
Minus strand
chr11:71,093,647-71,134,469
(GRCh37/hg19)

Genomic View for FLJ42102 Gene

Genes around FLJ42102 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ42102 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ42102 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ42102 Gene

Proteins for FLJ42102 Gene

Post-translational modifications for FLJ42102 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42102 Gene

Domains & Families for FLJ42102 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ42102 Gene

Function for FLJ42102 Gene

Phenotypes From GWAS Catalog for FLJ42102 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ42102 Gene

Localization for FLJ42102 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ42102 Gene

Pathways & Interactions for FLJ42102 Gene

SuperPathways for FLJ42102 Gene

No Data Available

Interacting Proteins for FLJ42102 Gene

Gene Ontology (GO) - Biological Process for FLJ42102 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ42102 Gene

Drugs & Compounds for FLJ42102 Gene

No Compound Related Data Available

Transcripts for FLJ42102 Gene

mRNA/cDNA for FLJ42102 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ42102 Gene

Uncharacterized LOC399923:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42102 Gene

No ASD Table

Relevant External Links for FLJ42102 Gene

GeneLoc Exon Structure for
FLJ42102

Expression for FLJ42102 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ42102 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ42102 Gene

This gene is overexpressed in Testis (x20.8).

SOURCE GeneReport for Unigene cluster for FLJ42102 Gene:

Hs.128191
genes like me logo Genes that share expression patterns with FLJ42102: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ42102 Gene

Orthologs for FLJ42102 Gene

Evolution for FLJ42102 Gene

ENSEMBL:
Gene Tree for FLJ42102 (if available)
TreeFam:
Gene Tree for FLJ42102 (if available)

No data available for Orthologs for FLJ42102 Gene

Paralogs for FLJ42102 Gene

No data available for Paralogs for FLJ42102 Gene

Variants for FLJ42102 Gene

Sequence variations from dbSNP and Humsavar for FLJ42102 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000095686 -- 71,419,562(-) T/C intron_variant
rs1000122583 -- 71,415,164(-) G/A intron_variant
rs1000180587 -- 71,424,225(-) G/A upstream_transcript_variant
rs1000271132 -- 71,407,875(-) C/A/T intron_variant
rs1000480246 -- 71,412,473(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ42102 Gene

Variant ID Type Subtype PubMed ID
nsv832202 CNV loss 17160897
esv3626776 CNV loss 21293372
esv2744747 CNV deletion 23290073
esv2660921 CNV deletion 23128226
dgv74n21 CNV loss 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for FLJ42102 Gene

Disorders for FLJ42102 Gene

Additional Disease Information for FLJ42102

No disorders were found for FLJ42102 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ42102 Gene

Publications for FLJ42102 Gene

No publications were found for FLJ42102 Gene.

Products for FLJ42102 Gene

Sources for FLJ42102 Gene

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