Aliases for FLJ40194 Gene

Data sources for FLJ40194 Gene:

RNA type for FLJ40194 Gene

lncRNA

Aliases for FLJ40194 Gene

External Ids for FLJ40194 Gene

Previous GeneCards Identifiers for FLJ40194 Gene

  • GC17P044681
  • GC17P047326
  • GC17P049248
  • GC17P049226

Summaries for FLJ40194 Gene

GeneCards Summary for FLJ40194 Gene

FLJ40194 (Uncharacterized FLJ40194) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FLJ40194 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FLJ40194 Gene

Genomics for FLJ40194 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around FLJ40194 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the FLJ40194 gene promoter:
  • AML1a
  • AREB6
  • GATA-1
  • GATA-2
  • GATA-3
  • Lmo2
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c

Genomic Locations for FLJ40194 Gene

Latest Assembly
chr17:49,225,087-49,318,011
(GRCh38/hg38)
Size:
92,925 bases
Orientation:
Plus strand

Previous Assembly
chr17:47,325,605-47,336,027
(GRCh37/hg19 by Entrez Gene)
Size:
10,423 bases
Orientation:
Plus strand

chr17:47,325,601-47,336,024
(GRCh37/hg19 by Ensembl)
Size:
10,424 bases
Orientation:
Plus strand

Genomic View for FLJ40194 Gene

Genes around FLJ40194 on UCSC Golden Path with GeneCards custom track
FLJ40194 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FLJ40194 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ40194 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ40194 Gene

Proteins for FLJ40194 Gene

  • Protein details for FLJ40194 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q8N7Z3-Q8N7Z3_HUMAN
    Recommended name:
    FLJ40194 protein
    Protein Accession:
    Q8N7Z3

    Protein attributes for FLJ40194 Gene

    Size:
    131 amino acids
    Molecular mass:
    14427 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FLJ40194 Gene

Post-translational modifications for FLJ40194 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ40194 Gene

Domains & Families for FLJ40194 Gene

Suggested Antigen Peptide Sequences for FLJ40194 Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ40194 fis, clone TESTI2019481 (Q8N7Z3_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FLJ40194 Gene

Function for FLJ40194 Gene

Phenotypes From GWAS Catalog for FLJ40194 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ40194 Gene

Localization for FLJ40194 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ40194 Gene

Pathways & Interactions for FLJ40194 Gene

PathCards logo

SuperPathways for FLJ40194 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FLJ40194 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FLJ40194 Gene

Drugs & Compounds for FLJ40194 Gene

No Compound Related Data Available

Transcripts for FLJ40194 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FLJ40194 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008BF3B3_9606 lncRNA 2317 2

Ensembl: ENST00000322227 (view in UCSC) ,

LNCipedia: lnc-ABI3-2:5,

URS000075DE7B_9606 lncRNA 722 2

RefSeq: NR_034161,

LNCipedia: lnc-ABI3-2:7,

URS0000EF0C6F_9606 lncRNA 1506 1

Ensembl: ENST00000656738 (view in UCSC) ,

URS0000EF1D60_9606 lncRNA 1267 1

Ensembl: ENST00000662835 (view in UCSC) ,

URS0000EEF25B_9606 lncRNA 1189 1

Ensembl: ENST00000655089 (view in UCSC) ,

FLJ40194 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FLJ40194 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ40194 Gene

No ASD Table

Relevant External Links for FLJ40194 Gene

GeneLoc Exon Structure for
FLJ40194

Expression for FLJ40194 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ40194 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ40194 Gene

This gene is overexpressed in Testis (x46.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FLJ40194

SOURCE GeneReport for Unigene cluster for FLJ40194 Gene:

Hs.446890
genes like me logo Genes that share expression patterns with FLJ40194: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ40194 Gene

Orthologs for FLJ40194 Gene

Evolution for FLJ40194 Gene

ENSEMBL:
Gene Tree for FLJ40194 (if available)
TreeFam:
Gene Tree for FLJ40194 (if available)

No data available for Orthologs for FLJ40194 Gene

Paralogs for FLJ40194 Gene

No data available for Paralogs for FLJ40194 Gene

Variants for FLJ40194 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FLJ40194 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for FLJ40194 Gene

Disorders for FLJ40194 Gene

No disorders were found for FLJ40194 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FLJ40194 Gene

Publications for FLJ40194 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 13
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 13

No data available for Mastermind for FLJ40194 Gene

Products for FLJ40194 Gene

Sources for FLJ40194 Gene