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Aliases for FLJ30679 Gene

Subcategory (RNA class) for FLJ30679 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ30679 Gene

  • Uncharacterized Protein FLJ30679 3 5

External Ids for FLJ30679 Gene

ORGUL Members for FLJ30679 Gene

Previous GeneCards Identifiers for FLJ30679 Gene

  • GC16P077944
  • GC16P087621
  • GC16P086329
  • GC16P086370
  • GC16U900030
  • GC16P085147
  • GC16P086588

Summaries for FLJ30679 Gene

GeneCards Summary for FLJ30679 Gene

FLJ30679 (Uncharacterized Protein FLJ30679) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FLJ30679 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ30679 Gene

Genomics for FLJ30679 Gene

GeneHancer (GH) Regulatory Elements for FLJ30679 Gene

Promoters and enhancers for FLJ30679 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I086554 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +0.1 74 2.3 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 POLR2B E2F8 ZNF143 SP3 MTHFSD FLJ30679 PIR58170 PIR60279 ENSG00000270020 FOXL1
GH16I086553 Enhancer 0.9 FANTOM5 ENCODE 550.8 -1.3 -1348 0.5 MEIS2 NFATC3 ASH1L CC2D1A POLR2B ZNF316 POLR2A NFYB FOS SP3 FLJ30679 MTHFSD GC16M086531 PIR36172
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FLJ30679 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FLJ30679 gene promoter:

Genomic Locations for FLJ30679 Gene

Genomic Locations for FLJ30679 Gene
chr16:86,555,320-86,557,299
(GRCh38/hg38)
Size:
1,980 bases
Orientation:
Plus strand
chr16:86,588,926-86,590,905
(GRCh37/hg19)

Genomic View for FLJ30679 Gene

Genes around FLJ30679 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ30679 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ30679 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ30679 Gene

Proteins for FLJ30679 Gene

Post-translational modifications for FLJ30679 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ30679 Gene

Domains & Families for FLJ30679 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ30679 Gene

Function for FLJ30679 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ30679 Gene

Localization for FLJ30679 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ30679 Gene

Pathways & Interactions for FLJ30679 Gene

SuperPathways for FLJ30679 Gene

No Data Available

Interacting Proteins for FLJ30679 Gene

Gene Ontology (GO) - Biological Process for FLJ30679 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ30679 Gene

Drugs & Compounds for FLJ30679 Gene

No Compound Related Data Available

Transcripts for FLJ30679 Gene

mRNA/cDNA for FLJ30679 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ30679 Gene

Uncharacterized protein FLJ30679:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ30679 Gene

No ASD Table

Relevant External Links for FLJ30679 Gene

GeneLoc Exon Structure for
FLJ30679

Expression for FLJ30679 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ30679 Gene

mRNA expression in normal human tissues for FLJ30679 Gene

SOURCE GeneReport for Unigene cluster for FLJ30679 Gene:

Hs.97422
genes like me logo Genes that share expression patterns with FLJ30679: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ30679 Gene

Orthologs for FLJ30679 Gene

Evolution for FLJ30679 Gene

ENSEMBL:
Gene Tree for FLJ30679 (if available)
TreeFam:
Gene Tree for FLJ30679 (if available)

No data available for Orthologs for FLJ30679 Gene

Paralogs for FLJ30679 Gene

No data available for Paralogs for FLJ30679 Gene

Variants for FLJ30679 Gene

Sequence variations from dbSNP and Humsavar for FLJ30679 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000616385 -- 86,555,275(+) C/A upstream_transcript_variant
rs1000874485 -- 86,554,368(+) G/A upstream_transcript_variant
rs1002054553 -- 86,554,854(+) G/A upstream_transcript_variant
rs1002128899 -- 86,555,369(+) G/C non_coding_transcript_variant
rs1002330138 -- 86,554,990(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ30679 Gene

Variant ID Type Subtype PubMed ID
dgv498n67 CNV gain 20364138
esv4262 OTHER complex 18987735
nsv1065605 CNV gain 25217958
nsv483044 CNV gain 15286789
nsv525024 CNV loss 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for FLJ30679 Gene

Disorders for FLJ30679 Gene

Additional Disease Information for FLJ30679

No disorders were found for FLJ30679 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ30679 Gene

Publications for FLJ30679 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for FLJ30679 Gene

Sources for FLJ30679 Gene

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