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Aliases for FLJ16779 Gene

Subcategory (RNA class) for FLJ16779 Gene


Quality Score for this RNA gene is


Aliases for FLJ16779 Gene

  • Uncharacterized LOC100192386 3 5

External Ids for FLJ16779 Gene

ORGUL Members for FLJ16779 Gene

Previous GeneCards Identifiers for FLJ16779 Gene

  • GC20U900409
  • GC20P061885

Summaries for FLJ16779 Gene

GeneCards Summary for FLJ16779 Gene

FLJ16779 (Uncharacterized LOC100192386) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for FLJ16779 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ16779 Gene

Genomics for FLJ16779 Gene

GeneHancer (GH) Regulatory Elements for FLJ16779 Gene

Promoters and enhancers for FLJ16779 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I063252 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 550.8 +0.6 561 4.3 CTCF ZBTB6 ZBTB8A ATF2 POLR2A SCRT2 ZNF143 CTBP2 ZNF600 ZBTB26 NKAIN4 GC20M063246 GC20M063249 FLJ16779 BIRC7 COL20A1 RNU6-994P ENSG00000231977 MIR124-3 ARFGAP1
GH20I063260 Enhancer 0.7 ENCODE 0.4 +7.5 7517 1.7 ZNF263 GATAD2A SAP130 NFXL1 ZIC2 ZGPAT POLR2A GLIS1 MBD1 CEBPA BIRC7 DIDO1 MIR647 UCKL1 NKAIN4 ENSG00000237371 COL20A1 RNU6-994P LAMA5 ENSG00000226332
GH20I063258 Enhancer 0.3 ENCODE 0.8 +5.0 4950 1 SCRT2 BIRC7 COL20A1 RNU6-994P ENSG00000231977 MIR124-3 ARFGAP1 FLJ16779 GC20M063249 GC20P063264 NKAIN4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FLJ16779 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FLJ16779 gene promoter:

Genomic Locations for FLJ16779 Gene

Genomic Locations for FLJ16779 Gene
7,638 bases
Plus strand

Genomic View for FLJ16779 Gene

Genes around FLJ16779 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ16779 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ16779 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ16779 Gene

Proteins for FLJ16779 Gene

Post-translational modifications for FLJ16779 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ16779 Gene

Domains & Families for FLJ16779 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ16779 Gene

Function for FLJ16779 Gene

Phenotypes From GWAS Catalog for FLJ16779 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ16779 Gene

Localization for FLJ16779 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ16779 Gene

Pathways & Interactions for FLJ16779 Gene

SuperPathways for FLJ16779 Gene

No Data Available

Interacting Proteins for FLJ16779 Gene

Gene Ontology (GO) - Biological Process for FLJ16779 Gene


No data available for Pathways by source and SIGNOR curated interactions for FLJ16779 Gene

Drugs & Compounds for FLJ16779 Gene

No Compound Related Data Available

Transcripts for FLJ16779 Gene

mRNA/cDNA for FLJ16779 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ16779 Gene

Uncharacterized LOC100192386:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ16779 Gene

No ASD Table

Relevant External Links for FLJ16779 Gene

GeneLoc Exon Structure for

Expression for FLJ16779 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ16779 Gene

mRNA expression in normal human tissues for FLJ16779 Gene

SOURCE GeneReport for Unigene cluster for FLJ16779 Gene:

genes like me logo Genes that share expression patterns with FLJ16779: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ16779 Gene

Orthologs for FLJ16779 Gene

Evolution for FLJ16779 Gene

Gene Tree for FLJ16779 (if available)
Gene Tree for FLJ16779 (if available)

No data available for Orthologs for FLJ16779 Gene

Paralogs for FLJ16779 Gene

No data available for Paralogs for FLJ16779 Gene

Variants for FLJ16779 Gene

Sequence variations from dbSNP and Humsavar for FLJ16779 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000155526 -- 63,253,750(+) C/A upstream_transcript_variant
rs1000162555 -- 63,260,558(+) C/T non_coding_transcript_variant
rs1000180622 -- 63,256,541(+) T/G non_coding_transcript_variant
rs1000267582 -- 63,255,373(+) G/A non_coding_transcript_variant
rs1000492247 -- 63,252,703(+) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ16779 Gene

Variant ID Type Subtype PubMed ID
dgv520n27 CNV loss 19166990
dgv7665n54 CNV loss 21841781
esv2722899 CNV deletion 23290073
esv32831 CNV loss 17666407
esv3646308 CNV loss 21293372
nsv3446 CNV deletion 18451855
nsv470560 CNV loss 18288195
nsv518905 CNV loss 19592680
nsv522880 CNV loss 19592680
nsv525279 CNV loss 19592680
nsv586562 CNV gain 21841781
nsv586563 CNV loss 21841781
nsv834032 CNV loss 17160897
nsv953306 CNV deletion 24416366
nsv9825 CNV gain 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for FLJ16779 Gene

Disorders for FLJ16779 Gene

Additional Disease Information for FLJ16779

No disorders were found for FLJ16779 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ16779 Gene

Publications for FLJ16779 Gene

  1. Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study. (PMID: 21779381) Schürks M … Kurth T (PloS one 2011) 44 58

Products for FLJ16779 Gene

Sources for FLJ16779 Gene

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