FLJ13224 Gene (RNA Gene)

Uncharacterized LOC79857

GC12P031324
GIFtS:
12
See more...

Aliases for FLJ13224 Gene

Subcategory (RNA class) for FLJ13224 Gene

ncRNA

Number of RNA Genes sources:

1 / 17

Aliases for FLJ13224 Gene

  • Uncharacterized LOC79857 3
  • Lnc-DDX11-4 165

External Ids for FLJ13224 Gene

Previous GeneCards Identifiers for FLJ13224 Gene

  • GC12P031860
  • GC12P031500
  • GC12P031377
  • GC12P031368
  • GC12P031478

Summaries for FLJ13224 Gene

GeneCards Summary for FLJ13224 Gene

FLJ13224 (Uncharacterized LOC79857) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ13224 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FLJ13224 Gene

Genomics for FLJ13224 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for FLJ13224 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J031316 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.2 -2191 11 HNRNPL CREB1 PRDM10 ZNF629 REST IKZF1 NFKBIZ ZNF692 POLR2A BACH1 SINHCAF DDX11 IPO8 ENSG00000177340 RESF1 ENSG00000256984 DENND5B DENND5B-AS1 RNU5F-4P FLJ13224
GH12J031315 Enhancer 0.7 dbSUPER 0.4 -8.7 -8687 1.2 PKNOX1 CEBPB ZBTB20 ZNF766 ZNF316 MAFF NR2C2 MEF2D ZNF592 MAFK ETFBKMT DENND5B RNU5F-4P DENND5B-AS1 ENSG00000256176 lnc-DDX11-2 ENSG00000177340 FLJ13224 SINHCAF lnc-DENND5B-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FLJ13224 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the FLJ13224 gene promoter:
  • Elk-1
  • FOXF2
  • FOXJ2
  • FOXJ2 (long isoform)

Genomic Locations for FLJ13224 Gene

Genomic Locations for FLJ13224 Gene
chr12:31,324,316-31,325,945
(GRCh38/hg38)
Size:
1,630 bases
Orientation:
Plus strand
chr12:31,477,250-31,478,879
(GRCh37/hg19)
Size:
1,630 bases
Orientation:
Plus strand

Genomic View for FLJ13224 Gene

Genes around FLJ13224 on UCSC Golden Path with GeneCards custom track
FLJ13224 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FLJ13224 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ13224 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FLJ13224 Gene

Proteins for FLJ13224 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FLJ13224 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ13224 Gene

Domains & Families for FLJ13224 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FLJ13224 Gene

Function for FLJ13224 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for FLJ13224 Gene

genes like me logo Genes that share phenotypes with FLJ13224: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ13224 Gene

Localization for FLJ13224 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ13224 Gene

Pathways & Interactions for FLJ13224 Gene

PathCards logo

SuperPathways for FLJ13224 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FLJ13224 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FLJ13224 Gene

Drugs & Compounds for FLJ13224 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FLJ13224 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FLJ13224 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E8B7_9606 lncRNA 1630 2

RefSeq: NR_026806,

LNCipedia: lnc-DDX11-4:1,

FLJ13224 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FLJ13224 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ13224 Gene

No ASD Table

Relevant External Links for FLJ13224 Gene

GeneLoc Exon Structure for
FLJ13224

Expression for FLJ13224 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ13224 Gene

mRNA expression in normal human tissues for FLJ13224 Gene
mRNA expression by BioGPS for FLJ13224 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FLJ13224

SOURCE GeneReport for Unigene cluster for FLJ13224 Gene:

Hs.534485
genes like me logo Genes that share expression patterns with FLJ13224: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ13224 Gene

Orthologs for FLJ13224 Gene

No data available for Orthologs and Evolution for FLJ13224 Gene

Paralogs for FLJ13224 Gene

No data available for Paralogs for FLJ13224 Gene

Variants for FLJ13224 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for FLJ13224 Gene

Structural Variations from Database of Genomic Variants (DGV) for FLJ13224 Gene

Variant ID Type Subtype PubMed ID
dgv63e55 CNV gain 17911159
esv2751043 CNV gain 17911159
esv2751046 CNV gain 17911159
esv2759890 CNV gain+loss 17122850
nsv428276 CNV gain 18775914
nsv661 CNV insertion 18451855
nsv832364 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for FLJ13224 Gene

Disorders for FLJ13224 Gene

Additional Disease Information for FLJ13224

Genetic Association Database
(GAD)

No disorders were found for FLJ13224 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ13224 Gene

Publications for FLJ13224 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for FLJ13224 Gene

Products for FLJ13224 Gene

Sources for FLJ13224 Gene