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FLJ13224 Gene(RNA Gene)

Uncharacterized LOC79857

GCID:
GC12P031324
GIFtS:
17
Genes Participants
UDN Logo

Aliases for FLJ13224 Gene

Subcategory (RNA class) for FLJ13224 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ13224 Gene

  • Uncharacterized LOC79857 3 5

External Ids for FLJ13224 Gene

Previous GeneCards Identifiers for FLJ13224 Gene

  • GC12P031860
  • GC12P031500
  • GC12P031377
  • GC12P031368
  • GC12P031478

Summaries for FLJ13224 Gene

GeneCards Summary for FLJ13224 Gene

FLJ13224 (Uncharacterized LOC79857) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ13224 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ13224 Gene

Genomics for FLJ13224 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for FLJ13224 Gene

Promoters and enhancers for FLJ13224 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12I031316 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 19.6 -2.3 -2261 10.8 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SINHCAF IPO8 FLJ13224 KIAA1551 DDX11 H3F3C DENND5B DENND5B-AS1 RNU5F-4P ENSG00000256176
GH12I031726 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 20.9 +404.2 404161 3.9 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 AMN1 ENSG00000276900 GC12P031730 CAPRIN2 DDX11 DDX11-AS1 BICD1 SINHCAF LOC100420981 FLJ13224
GH12I031658 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 13.5 +335.1 335126 2.2 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A ZNF2 YY1 POLR2B ZNF213 ETFBKMT KIAA1551 DDX11 SINHCAF FLJ13224 IPO8 AK4P3 DSPA2D GC12P031714
GH12I031072 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 13.5 -250.4 -250443 2.3 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B DDX11 DDX11-AS1 SINHCAF FLJ13224 KIAA1551 IPO8 ENSG00000212533 GC12M031076
GH12I031745 Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.7 +425.0 425015 6.9 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ENSG00000256843 GC12M031774 LOC100420981 DDX11 DDX11-AS1 H3F3C KIAA1551 CAPRIN2 BICD1 SINHCAF
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FLJ13224 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FLJ13224 gene promoter:

Genomic Locations for FLJ13224 Gene

Genomic Locations for FLJ13224 Gene
chr12:31,324,316-31,325,945
(GRCh38/hg38)
Size:
1,630 bases
Orientation:
Plus strand
chr12:31,477,250-31,478,879
(GRCh37/hg19)

Genomic View for FLJ13224 Gene

Genes around FLJ13224 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ13224 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ13224 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FLJ13224 Gene

Proteins for FLJ13224 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FLJ13224 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ13224 Gene

Domains & Families for FLJ13224 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ13224 Gene

Function for FLJ13224 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes for FLJ13224 Gene

GenomeRNAi human phenotypes for FLJ13224:
genes like me logo Genes that share phenotypes with FLJ13224: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ13224 Gene

Localization for FLJ13224 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ13224 Gene

Pathways & Interactions for FLJ13224 Gene

SuperPathways for FLJ13224 Gene

PathCards logo More details on SuperPathways for FLJ13224
No Data Available

Interacting Proteins for FLJ13224 Gene

Gene Ontology (GO) - Biological Process for FLJ13224 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ13224 Gene

Drugs & Compounds for FLJ13224 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FLJ13224 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for FLJ13224 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ13224 Gene

Uncharacterized LOC79857:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ13224 Gene

No ASD Table

Relevant External Links for FLJ13224 Gene

GeneLoc Exon Structure for
FLJ13224

Expression for FLJ13224 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ13224 Gene

mRNA expression in normal human tissues for FLJ13224 Gene
mRNA expression by BioGPS for FLJ13224 Gene

SOURCE GeneReport for Unigene cluster for FLJ13224 Gene:

Hs.534485
genes like me logo Genes that share expression patterns with FLJ13224: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ13224 Gene

Orthologs for FLJ13224 Gene

Evolution for FLJ13224 Gene

ENSEMBL:
Gene Tree for FLJ13224 (if available)
TreeFam:
Gene Tree for FLJ13224 (if available)

No data available for Orthologs for FLJ13224 Gene

Paralogs for FLJ13224 Gene

No data available for Paralogs for FLJ13224 Gene

Variants for FLJ13224 Gene

Sequence variations from dbSNP and Humsavar for FLJ13224 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000709369 -- 31,323,859(+) G/A upstream_transcript_variant
rs1001459710 -- 31,324,457(+) G/C non_coding_transcript_variant
rs1001558852 -- 31,324,454(+) A/G non_coding_transcript_variant
rs1002217473 -- 31,324,192(+) C/G upstream_transcript_variant
rs1002819039 -- 31,325,477(+) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ13224 Gene

Variant ID Type Subtype PubMed ID
nsv832364 CNV loss 17160897
nsv661 CNV insertion 18451855
nsv428276 CNV gain 18775914
esv2759890 CNV gain+loss 17122850
esv2751046 CNV gain 17911159
esv2751043 CNV gain 17911159
dgv63e55 CNV gain 17911159

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for FLJ13224 Gene

Disorders for FLJ13224 Gene

Additional Disease Information for FLJ13224

Genetic Association Database
(GAD)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for FLJ13224 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ13224 Gene

Publications for FLJ13224 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FLJ13224 Gene

Sources for FLJ13224 Gene

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