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This gene encodes a transcription factor containing an ETS DNA-binding domain. The gene can undergo a t(11;22)(q24;q12) translocation with the Ewing sarcoma gene on chromosome 22, which results in a fusion gene that is present in the majority of Ewing sarcoma cases. An acute lymphoblastic leukemia-associated t(4;11)(q21;q23) translocation involving this gene has also been identified. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2012]
FLI1 (Fli-1 Proto-Oncogene, ETS Transcription Factor) is a Protein Coding gene. Diseases associated with FLI1 include Bleeding Disorder, Platelet-Type, 21 and Isolated Delta-Storage Pool Disease. Among its related pathways are Hematopoietic Stem Cell Differentiation and Transcriptional misregulation in cancer. Gene Ontology (GO) annotations related to this gene include DNA-binding transcription factor activity and chromatin binding. An important paralog of this gene is ERG.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH11J128692 | Promoter/Enhancer | 2 | EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER | 250.4 | +9.8 | 9834 | 7.4 | ZIC2 SIN3A GABPA CTCF ZNF639 MAFF ZNF341 EBF1 KLF9 MAX | SENCR FLI1 HSALNG0088109 KCNJ1 | |
GH11J128684 | Promoter/Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 250.7 | -0.1 | -62 | 0.8 | CBX8 EZH2 ZNF143 USF2 | FLI1 LOC101929538 ETS1-AS1 LOC105369568 ETS1 | |
GH11J128688 | Promoter/Enhancer | 0.9 | EPDnew ENCODE dbSUPER | 250.7 | +1.2 | 1245 | 0.2 | EGR1 EZH2 BACH1 | FLI1 LOC101929538 HSALNG0088109 KCNJ1 | |
GH11J128689 | Promoter/Enhancer | 0.8 | Ensembl ENCODE dbSUPER | 250.7 | +1.7 | 1705 | 0.3 | EZH2 | FLI1 LOC101929538 HSALNG0088109 KCNJ1 | |
GH11J128687 | Enhancer | 0.6 | ENCODE dbSUPER | 250.7 | +0.9 | 868 | 0.2 | SPI1 EZH2 BACH1 | FLI1 LOC101929538 HSALNG0088109 KCNJ1 |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0000978 | RNA polymerase II proximal promoter sequence-specific DNA binding | IEA | -- |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | ISA | -- |
GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | IEA | -- |
GO:0003677 | DNA binding | TAS | 1522903 |
GO:0003682 | chromatin binding | IEA | -- |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0000785 | chromatin | ISA | -- |
GO:0005634 | nucleus | IBA,IDA | 28255014 |
GO:0005654 | nucleoplasm | IDA | -- |
GO:0005829 | cytosol | IDA | -- |
GO:0016604 | nuclear body | IDA | -- |
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | NF-kappaB Signaling | ||
2 | Transcriptional misregulation in cancer | ||
3 | Hematopoietic Stem Cell Differentiation |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
GO:0006357 | regulation of transcription by RNA polymerase II | IBA | 21873635 |
GO:0007599 | hemostasis | TAS | 10891501 |
GO:0008015 | blood circulation | IEA | -- |
GO:0009887 | animal organ morphogenesis | TAS,IEA | -- |
ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b | · | 11c |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | - | - | |||||||||||||||||||||||||||||
SP2: | - | - | - | ||||||||||||||||||||||||||||
SP3: | - | - | - | ||||||||||||||||||||||||||||
SP4: | |||||||||||||||||||||||||||||||
SP5: | - |
This gene was present in the common ancestor of animals.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
Chimpanzee (Pan troglodytes) |
Mammalia | FLI1 30 31 |
|
OneToOne | |
Dog (Canis familiaris) |
Mammalia | FLI1 30 31 |
|
OneToOne | |
Oppossum (Monodelphis domestica) |
Mammalia | FLI1 31 |
|
OneToOne | |
Cow (Bos Taurus) |
Mammalia | FLI1 30 31 |
|
OneToOne | |
Mouse (Mus musculus) |
Mammalia | Fli1 30 17 31 |
|
OneToOne | |
Rat (Rattus norvegicus) |
Mammalia | Fli1 30 |
|
||
Chicken (Gallus gallus) |
Aves | FLI1 30 31 |
|
OneToOne | |
Lizard (Anolis carolinensis) |
Reptilia | FLI1 31 |
|
OneToOne | |
Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | fli1 30 |
|
||
African clawed frog (Xenopus laevis) |
Amphibia | Xl.1184 30 |
|
||
Zebrafish (Danio rerio) |
Actinopterygii | fli1a 30 31 |
|
OneToOne | |
fli1 30 |
|
||||
Rainbow Trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.3935 30 |
|
||
Fruit Fly (Drosophila melanogaster) |
Insecta | Ets65A 32 |
|
|
|
Ets21C 31 32 |
|
OneToMany | |||
Worm (Caenorhabditis elegans) |
Secernentea | C42D8.4 32 |
|
|
|
Sea Squirt (Ciona savignyi) |
Ascidiacea | -- 31 |
|
ManyToMany | |
-- 31 |
|
ManyToMany | |||
-- 31 |
|
ManyToMany |
SNP ID | Clinical significance and condition | Chr 11 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
986337 | Likely Pathogenic: Bleeding disorder, platelet-type, 21 | 128,810,481(+) |
G/T NM_002017.5(FLI1):c.852G>T (p.Trp284Cys) |
MISSENSE | |
988011 | Uncertain Significance: Bleeding disorder, platelet-type, 21 | 128,758,299(+) |
G/T NM_002017.5(FLI1):c.203G>T (p.Arg68Leu) |
MISSENSE_VARIANT,FIVE_PRIME_UTR | |
rs1064797083 | Likely Pathogenic: Bleeding disorder, platelet-type, 21. Bleeding disorder, platelet-type 21 (BDPLT21) [MIM:617443] | 128,810,638(+) |
C/Tp.Arg337Trp NM_002017.5(FLI1):c.1009C>T (p.Arg337Trp) |
MISSENSE | |
rs1064797084 | Pathogenic: Bleeding disorder, platelet-type, 21. Bleeding disorder, platelet-type 21 (BDPLT21) [MIM:617443] | 128,810,657(+) |
A/Gp.Tyr343Cys NM_002017.5(FLI1):c.1028A>G (p.Tyr343Cys) |
MISSENSE | |
rs1064797085 | Pathogenic/Likely Pathogenic: Thrombocytopenia; Abnormal bleeding; Bleeding disorder, platelet-type, 21 | 128,810,619(+) |
GAATT/G NM_002017.5(FLI1):c.992_995del (p.Asn331fs) |
FRAMESHIFT |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv250n67 | CNV | loss | 20364138 |
esv2666423 | CNV | deletion | 23128226 |
esv2745240 | CNV | deletion | 23290073 |
esv275021 | CNV | gain+loss | 21479260 |
esv28700 | CNV | gain | 19812545 |
esv3254940 | CNV | deletion | 24192839 |
esv3548511 | CNV | deletion | 23714750 |
esv3579957 | CNV | loss | 25503493 |
esv3628048 | CNV | gain | 21293372 |
esv3628049 | CNV | loss | 21293372 |
esv994512 | CNV | deletion | 20482838 |
nsv1037438 | CNV | gain | 25217958 |
nsv1070495 | CNV | deletion | 25765185 |
nsv38628 | CNV | deletion | 16902084 |
nsv468891 | CNV | loss | 19166990 |
nsv526725 | CNV | loss | 19592680 |
nsv543 | CNV | insertion | 18451855 |
nsv545 | CNV | deletion | 18451855 |
nsv556559 | CNV | loss | 21841781 |
nsv556560 | CNV | loss | 21841781 |
nsv556561 | CNV | loss | 21841781 |
nsv556562 | CNV | loss | 21841781 |
nsv819457 | CNV | gain | 19587683 |
nsv820393 | CNV | deletion | 20802225 |
nsv826128 | CNV | gain | 20364138 |
nsv952759 | CNV | duplication | 24416366 |
Disorder | Aliases | PubMed IDs |
---|---|---|
bleeding disorder, platelet-type, 21 |
|
|
isolated delta-storage pool disease |
|
|
ewing sarcoma |
|
|
thrombocytopenia |
|
|
extraskeletal ewing sarcoma |
|
|