Aliases for FLG-AS1 Gene

Subcategory (RNA class) for FLG-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for FLG-AS1 Gene

  • FLG Antisense RNA 1 2 3 5
  • FLG Antisense RNA 1 (Non-Protein Coding) 2 3
  • FLG-AS1 2 170
  • NONHSAG002948 94
  • HSALNG0007223 169
  • NONHSAG002949 94

External Ids for FLG-AS1 Gene

Previous GeneCards Identifiers for FLG-AS1 Gene

  • GC01P152140

Summaries for FLG-AS1 Gene

GeneCards Summary for FLG-AS1 Gene

FLG-AS1 (FLG Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FLG-AS1 include Peeling Skin Syndrome 6 and Dermatitis, Atopic, 2.

Additional gene information for FLG-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FLG-AS1 Gene

Genomics for FLG-AS1 Gene

GeneHancer (GH) Regulatory Elements for FLG-AS1 Gene

Promoters and enhancers for FLG-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FLG-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FLG-AS1 Gene

Genomic Locations for FLG-AS1 Gene
chr1:152,168,125-152,445,460
(GRCh38/hg38)
Size:
277,336 bases
Orientation:
Plus strand
chr1:152,140,601-152,339,311
(GRCh37/hg19)
Size:
198,711 bases
Orientation:
Plus strand

Genomic View for FLG-AS1 Gene

Genes around FLG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLG-AS1 Gene

Proteins for FLG-AS1 Gene

Post-translational modifications for FLG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLG-AS1 Gene

Domains & Families for FLG-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FLG-AS1 Gene

Function for FLG-AS1 Gene

Phenotypes From GWAS Catalog for FLG-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLG-AS1 Gene

Localization for FLG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLG-AS1 Gene

Pathways & Interactions for FLG-AS1 Gene

PathCards logo

SuperPathways for FLG-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FLG-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLG-AS1 Gene

Drugs & Compounds for FLG-AS1 Gene

No Compound Related Data Available

Transcripts for FLG-AS1 Gene

mRNA/cDNA for FLG-AS1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(18) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(28) RNACentral transcripts :
(20) LNCipedia transcripts :
(15) LncBook transcripts :
(12) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FLG-AS1 Gene

No ASD Table

Relevant External Links for FLG-AS1 Gene

GeneLoc Exon Structure for
FLG-AS1
ECgene alternative splicing isoforms for
FLG-AS1

Expression for FLG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLG-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FLG-AS1 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x4.4).

SOURCE GeneReport for Unigene cluster for FLG-AS1 Gene:

Hs.23783
genes like me logo Genes that share expression patterns with FLG-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLG-AS1 Gene

Orthologs for FLG-AS1 Gene

Evolution for FLG-AS1 Gene

ENSEMBL:
Gene Tree for FLG-AS1 (if available)
TreeFam:
Gene Tree for FLG-AS1 (if available)

No data available for Orthologs for FLG-AS1 Gene

Paralogs for FLG-AS1 Gene

No data available for Paralogs for FLG-AS1 Gene

Variants for FLG-AS1 Gene

Sequence variations from dbSNP and Humsavar for FLG-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1050823116 pathogenic, PEELING SKIN SYNDROME 6 152,357,154(+) G/C intron_variant
rs1060499587 likely-pathogenic, Ichthyosis vulgaris 152,313,983(+) CCTGTCCTG/CCTG genic_upstream_transcript_variant, non_coding_transcript_variant
rs114733570 pathogenic, not provided, Ichthyosis vulgaris 152,315,363(+) C/A genic_upstream_transcript_variant, intron_variant
rs1214424848 pathogenic, not provided, Dermatitis, atopic, 2, Ichthyosis vulgaris 152,314,399(+) C/A/T genic_upstream_transcript_variant, intron_variant
rs1218912272 pathogenic, Abnormality of salivation, Abnormality of the skin, Congenital cerebellar hypoplasia, Dry skin, Feeding difficulties, Ichthyosis, Microcephaly, Paroxysmal dystonia 152,314,342(+) T/A genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FLG-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv200n106 CNV duplication 24896259
esv2043587 CNV deletion 18987734
esv25681 CNV loss 19812545
esv2593579 CNV deletion 19546169
esv2663079 CNV deletion 23128226
esv2664011 CNV deletion 23128226
esv2718140 CNV deletion 23290073
esv2718151 CNV deletion 23290073
esv3540790 CNV deletion 23714750
esv3578178 CNV loss 25503493
esv3587546 CNV gain 21293372
esv3587547 CNV loss 21293372
nsv1014095 CNV gain 25217958
nsv1075398 CNV duplication 25765185
nsv1147169 CNV duplication 26484159
nsv471348 CNV gain 19718026
nsv952208 CNV deletion 24416366
nsv998298 CNV loss 25217958

Additional Variant Information for FLG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FLG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FLG-AS1 Gene

Disorders for FLG-AS1 Gene

MalaCards: The human disease database

(4) MalaCards diseases for FLG-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
peeling skin syndrome 6
  • pss6
dermatitis, atopic, 2
  • dermatitis, atopic
paroxysmal dystonia
dermatitis, atopic
  • atod
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FLG-AS1

genes like me logo Genes that share disorders with FLG-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FLG-AS1 Gene

Publications for FLG-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 56
  2. Genetic variants associated with disordered eating. (PMID: 23568457) Wade TD … Martin NG (The International journal of eating disorders 2013) 3 56
  3. Genome-wide association study identifies two new susceptibility loci for atopic dermatitis in the Chinese Han population. (PMID: 21666691) Sun LD … Zhang XJ (Nature genetics 2011) 3 56
  4. A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality. (PMID: 20691247) Verweij KJ … Wray NR (Biological psychology 2010) 3 56
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for FLG-AS1 Gene

Sources for FLG-AS1 Gene