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Aliases for FKBP1A-SDCBP2 Gene

Subcategory (RNA class) for FKBP1A-SDCBP2 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FKBP1A-SDCBP2 Gene

  • FKBP1A-SDCBP2 Readthrough (NMD Candidate) 2 3

External Ids for FKBP1A-SDCBP2 Gene

Previous GeneCards Identifiers for FKBP1A-SDCBP2 Gene

  • GC20U900632
  • GC20P001308

Summaries for FKBP1A-SDCBP2 Gene

Entrez Gene Summary for FKBP1A-SDCBP2 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring FK506 binding protein 1A, 12kDa and syndecan binding protein (syntenin) 2 genes on chromosome 20. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

GeneCards Summary for FKBP1A-SDCBP2 Gene

FKBP1A-SDCBP2 (FKBP1A-SDCBP2 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FKBP1A-SDCBP2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FKBP1A-SDCBP2 Gene

Genomics for FKBP1A-SDCBP2 Gene

GeneHancer (GH) Regulatory Elements for FKBP1A-SDCBP2 Gene

Promoters and enhancers for FKBP1A-SDCBP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I001388 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.7 1743 6.7 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SLC30A9 ENSG00000274322 FKBP1A FKBP1A-SDCBP2 GC20M001393 GC20M001394 MIR6869 SDCBP2 ENSG00000229728 NSFL1C SIRPB2
GH20I001394 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -6.1 -6142 8.9 FOXA2 ARID4B NEUROD1 SIN3A YY1 ZNF766 FOS RXRA MXD4 REST SDCBP2 FKBP1A NSFL1C FKBP1A-SDCBP2 LOC105372497
GH20I001321 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +66.0 66041 11.1 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 SDCBP2 SDCBP2-AS1 FKBP1A ENSG00000229728 SIRPB1 SIRPG ENSG00000280162 ENSG00000274322 FKBP1A-SDCBP2
GH20I001375 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +15.9 15939 4.2 FOXA2 BATF IRF4 YY1 TCF12 ZNF366 SCRT2 IKZF2 RUNX3 SMARCA5 SDCBP2 SDCBP2-AS1 ENSG00000274322 FKBP1A FKBP1A-SDCBP2 ENSG00000229728 MIR6869
GH20I001312 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.2 +79.6 79570 1.3 ELF3 RB1 ARID4B SIN3A ZNF2 THRB ZNF48 RAD21 ZNF335 ZNF207 SDCBP2 ENSG00000280162 PIR62557 FKBP1A-SDCBP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FKBP1A-SDCBP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FKBP1A-SDCBP2 Gene

Genomic Locations for FKBP1A-SDCBP2 Gene
chr20:1,309,909-1,393,172
(GRCh38/hg38)
Size:
83,264 bases
Orientation:
Minus strand
chr20:1,290,553-1,373,816
(GRCh37/hg19)

Genomic View for FKBP1A-SDCBP2 Gene

Genes around FKBP1A-SDCBP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FKBP1A-SDCBP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FKBP1A-SDCBP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FKBP1A-SDCBP2 Gene

Proteins for FKBP1A-SDCBP2 Gene

Post-translational modifications for FKBP1A-SDCBP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FKBP1A-SDCBP2 Gene

Domains & Families for FKBP1A-SDCBP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FKBP1A-SDCBP2 Gene

Function for FKBP1A-SDCBP2 Gene

Phenotypes for FKBP1A-SDCBP2 Gene

genes like me logo Genes that share phenotypes with FKBP1A-SDCBP2: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FKBP1A-SDCBP2 Gene

Localization for FKBP1A-SDCBP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FKBP1A-SDCBP2 Gene

Pathways & Interactions for FKBP1A-SDCBP2 Gene

SuperPathways for FKBP1A-SDCBP2 Gene

No Data Available

Interacting Proteins for FKBP1A-SDCBP2 Gene

Gene Ontology (GO) - Biological Process for FKBP1A-SDCBP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FKBP1A-SDCBP2 Gene

Drugs & Compounds for FKBP1A-SDCBP2 Gene

No Compound Related Data Available

Transcripts for FKBP1A-SDCBP2 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FKBP1A-SDCBP2 Gene

No ASD Table

Relevant External Links for FKBP1A-SDCBP2 Gene

GeneLoc Exon Structure for
FKBP1A-SDCBP2
ECgene alternative splicing isoforms for
FKBP1A-SDCBP2

No data available for mRNA/cDNA for FKBP1A-SDCBP2 Gene

Expression for FKBP1A-SDCBP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FKBP1A-SDCBP2 Gene

mRNA expression in normal human tissues for FKBP1A-SDCBP2 Gene
genes like me logo Genes that share expression patterns with FKBP1A-SDCBP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FKBP1A-SDCBP2 Gene

Orthologs for FKBP1A-SDCBP2 Gene

No data available for Orthologs and Evolution for FKBP1A-SDCBP2 Gene

Paralogs for FKBP1A-SDCBP2 Gene

No data available for Paralogs for FKBP1A-SDCBP2 Gene

Variants for FKBP1A-SDCBP2 Gene

Sequence variations from dbSNP and Humsavar for FKBP1A-SDCBP2 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000027090 -- 1,364,328(-) C/T intron_variant
rs1000043577 -- 1,364,059(-) A/G intron_variant
rs1000097636 -- 1,329,149(-) C/T intron_variant
rs1000138257 -- 1,321,607(-) C/A intron_variant
rs1000139687 -- 1,373,916(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FKBP1A-SDCBP2 Gene

Variant ID Type Subtype PubMed ID
esv2664030 CNV deletion 23128226
esv3644976 CNV loss 21293372
nsv1057097 CNV gain 25217958
nsv1071671 CNV deletion 25765185
nsv1118074 CNV deletion 24896259
nsv1138912 CNV deletion 24896259
nsv1147992 OTHER inversion 26484159
nsv518295 CNV loss 19592680
nsv522008 CNV gain 19592680
nsv979410 CNV duplication 23825009

Additional Variant Information for FKBP1A-SDCBP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FKBP1A-SDCBP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FKBP1A-SDCBP2 Gene

Disorders for FKBP1A-SDCBP2 Gene

Additional Disease Information for FKBP1A-SDCBP2

No disorders were found for FKBP1A-SDCBP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FKBP1A-SDCBP2 Gene

Publications for FKBP1A-SDCBP2 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58

Products for FKBP1A-SDCBP2 Gene

Sources for FKBP1A-SDCBP2 Gene

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