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The protein encoded by this gene belongs to the SAC domain-containing protein gene family. The SAC domain, approximately 400 amino acids in length and consisting of seven conserved motifs, has been shown to possess phosphoinositide phosphatase activity. The yeast homolog, Sac1p, is involved in the regulation of various phosphoinositides, and affects diverse cellular functions s... See more...
Aliases for FIG4 Gene
Aliases for FIG4 Gene
- FIG4 Phosphoinositide 5-Phosphatase 2 3 5
- KIAA0274 2 3 4
- SAC3 2 3 4
- Phosphatidylinositol 3,5-Bisphosphate 5-Phosphatase 3 4
- Polyphosphoinositide Phosphatase 3 4
- SAC Domain-Containing Protein 3 3 4
- DJ249I4.1 2 3
- ALS11 2 3
- CMT4J 2 3
- FIG4 Homolog, SAC1 Lipid Phosphatase Domain Containing (S. Cerevisiae) 2
- FIG4 Homolog, SAC1 Domain Containing Lipid Phosphatase 3
External Ids for FIG4 Gene
- HGNC: 16873
- NCBI Entrez Gene: 9896
- Ensembl: ENSG00000112367
- OMIM®: 609390
- UniProtKB/Swiss-Prot: Q92562
Previous HGNC Symbols for FIG4 Gene
- KIAA0274
Previous GeneCards Identifiers for FIG4 Gene
- GC06P110120
- GC06P110012
- GC06P107578
Summaries for FIG4 Gene
-
The protein encoded by this gene belongs to the SAC domain-containing protein gene family. The SAC domain, approximately 400 amino acids in length and consisting of seven conserved motifs, has been shown to possess phosphoinositide phosphatase activity. The yeast homolog, Sac1p, is involved in the regulation of various phosphoinositides, and affects diverse cellular functions such as actin cytoskeleton organization, Golgi function, and maintenance of vacuole morphology. Membrane-bound phosphoinositides function as signaling molecules and play a key role in vesicle trafficking in eukaryotic cells. Mutations in this gene have been associated with Charcot-Marie-Tooth disease, type 4J. [provided by RefSeq, Jul 2008]
GeneCards Summary for FIG4 Gene
FIG4 (FIG4 Phosphoinositide 5-Phosphatase) is a Protein Coding gene. Diseases associated with FIG4 include Polymicrogyria, Bilateral Temporooccipital and Charcot-Marie-Tooth Disease, Type 4J. Among its related pathways are Pathways of neurodegeneration - multiple diseases and Glycerophospholipid biosynthesis. Gene Ontology (GO) annotations related to this gene include phosphatidylinositol-3-phosphatase activity and phosphatidylinositol bisphosphate phosphatase activity. An important paralog of this gene is INPP5F.
UniProtKB/Swiss-Prot Summary for FIG4 Gene
-
The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). In vitro, hydrolyzes all three D5-phosphorylated polyphosphoinositide substrates in the order PtdIns(4,5)P2 > PtdIns(3,5)P2 > PtdIns(3,4,5)P3. Plays a role in the biogenesis of endosome carrier vesicles (ECV) / multivesicular bodies (MVB) transport intermediates from early endosomes.
Additional gene information for FIG4 Gene
No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FIG4 Gene
Genomics for FIG4 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for FIG4 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around FIG4 on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for FIG4
- Top Transcription factor binding sites by QIAGEN in the FIG4 gene promoter:
-
- c-Myb
- CBF(2)
- HOXA9
- HOXA9B
- Meis-1
- Meis-1a
- Meis-1b
- NF-Y
- Sp1
Genomic Locations for FIG4 Gene
Latest Assembly
- chr6:109,690,609-109,878,098
- (GRCh38/hg38)
- Size:
- 187,490 bases
- Orientation:
- Plus strand
Previous Assembly
- chr6:110,012,499-110,146,629
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 134,131 bases
- Orientation:
- Plus strand
Genomic View for FIG4 Gene
Genes around FIG4 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6q21 by HGNC
- 6q21 by Entrez Gene
- 6q21 by Ensembl
FIG4 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FIG4 Gene
Proteins for FIG4 Gene
-
Protein details for FIG4 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q92562-FIG4_HUMAN
- Recommended name:
- Polyphosphoinositide phosphatase
- Protein Accession:
- Q92562
- Q53H49
- Q5TCS6
Protein attributes for FIG4 Gene
- Size:
- 907 amino acids
- Molecular mass:
- 103635 Da
- Quaternary structure:
-
- Component of the PI(3,5)P2 regulatory complex/PAS complex, at least composed of PIKFYVE, FIG4 and VAC14. VAC14 nucleates the assembly of the complex and serves as a scaffold.
- SequenceCaution:
-
- Sequence=BAA13403.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
Protein Expression for FIG4 Gene
Selected DME Specific Peptides for FIG4 Gene
- Q92562:
-
- DCLDRTN
- TLIARRS
Post-translational modifications for FIG4 Gene
Other Protein References for FIG4 Gene
- ENSEMBL proteins:
-
- ENSP00000502452
- ENSP00000501810
- ENSP00000502353
- ENSP00000502276
- ENSP00000502376
- ENSP00000502742
- ENSP00000502595
- ENSP00000502181
- ENSP00000502314
- ENSP00000502162
- ENSP00000502098
- ENSP00000501661
- ENSP00000501583
- ENSP00000501819
- ENSP00000502755
- ENSP00000502384
- ENSP00000502197
- ENSP00000502561
- ENSP00000501868
- ENSP00000357937
- ENSP00000412156
- ENSP00000502614
- ENSP00000502123
- ENSP00000502201
- ENSP00000502758
- ENSP00000501904
- ENSP00000501609
- ENSP00000502769
- ENSP00000502657
- ENSP00000230124
- ENSP00000501678
- ENSP00000502407
- ENSP00000502705
- ENSP00000502116
- ENSP00000501669
- ENSP00000501633
- ENSP00000501961
- ENSP00000502746
- ENSP00000502382
- ENSP00000501608
- ENSP00000502668
- ENSP00000405660
- ENSP00000501682
- ENSP00000502419
- ENSP00000502582
- Q92562.160
- REFSEQ proteins:
Antibodies for research
-
Custom Antibody ServicesOriGene Antibodies for FIG4
- Novus Biologicals Antibodies for FIG4
-
Abcam antibodies for FIG4
- Invitrogen Antibodies for FIG4 (AFLGC-FIG4)
-
Boster Bio Antibodies for FIG4
-
Custom Antibody ServicesProSci Antibodies for FIG4
Protein products for research
- Search Origene for MassSpec and Protein Over-expression Lysates for FIG4
- Origene Custom Protein Services for FIG4
-
Abcam proteins for FIG4
Assay products for research
- antibodies-online: Search results for available FIG4 related products ranked by validation data
Domains & Families for FIG4 Gene
Gene Families for FIG4 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Disease related genes
- Predicted intracellular proteins
- Predicted membrane proteins
Suggested Antigen Peptide Sequences for FIG4 Gene
- GenScript: Design optimal peptide antigens:
-
- SAC domain-containing protein 3 (FIG4_HUMAN)
- FIG4 homolog (S. cerevisiae) (Q5JRV6_HUMAN)
No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FIG4 Gene
Function for FIG4 Gene
Molecular function for FIG4 Gene
- UniProtKB/Swiss-Prot Function:
- The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). In vitro, hydrolyzes all three D5-phosphorylated polyphosphoinositide substrates in the order PtdIns(4,5)P2 > PtdIns(3,5)P2 > PtdIns(3,4,5)P3. Plays a role in the biogenesis of endosome carrier vesicles (ECV) / multivesicular bodies (MVB) transport intermediates from early endosomes.
Enzyme Numbers (IUBMB) for FIG4 Gene
Phenotypes From GWAS Catalog for FIG4 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004438 | phosphatidylinositol-3-phosphatase activity | IDA | -- |
| GO:0005515 | protein binding | IPI | 17556371 |
| GO:0016787 | hydrolase activity | IEA | -- |
| GO:0034593 | phosphatidylinositol bisphosphate phosphatase activity | IDA | -- |
| GO:0042578 | phosphoric ester hydrolase activity | IEA | -- |
Phenotypes for FIG4 Gene
- MGI mutant phenotypes for FIG4:
-
inferred from 2 alleles
- nervous system phenotype
- muscle phenotype
- growth/size/body region phenotype
- cardiovascular system phenotype
- behavior/neurological phenotype
- immune system phenotype
- mortality/aging
- hematopoietic system phenotype
- limbs/digits/tail phenotype
- skeleton phenotype
- integument phenotype
- pigmentation phenotype
- craniofacial phenotype
- GenomeRNAi human phenotypes for FIG4:
-
- no effect
- Decreased vaccinia virus (VACV) infection
- Decreased viability with paclitaxel
- Decreased transferrin (TF) endocytosis, decreased endosome-nucleus distance (endosomes clustered in the perinuclear region)
- Decreased viability
- Decreased POU5F1-GFP protein expression
- Decreased OCT4 protein expression
- Decreased NANOG protein expression
Animal Models for research
-
Taconic Biosciences Mouse Models for FIG4
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for FIG4 - Starting at $85 >
- * FIG4 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for FIG4
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for FIG4
-
Santa Cruz Biotechnology (SCBT) CRISPR for FIG4
miRNA for FIG4 Gene
- miRTarBase miRNAs that target FIG4
-
- hsa-miR-335-5p (MIRT019027)
- hsa-miR-1-3p (MIRT024087)
- hsa-miR-26b-5p (MIRT030214)
- hsa-miR-5089-5p (MIRT519305)
- hsa-miR-7151-3p (MIRT519306)
- hsa-miR-6807-5p (MIRT519307)
- hsa-miR-5095 (MIRT519308)
- hsa-miR-4252 (MIRT519309)
- hsa-miR-6889-3p (MIRT519310)
- hsa-miR-6506-5p (MIRT519311)
- hsa-miR-619-5p (MIRT519312)
- hsa-miR-6849-3p (MIRT519313)
- hsa-miR-6504-3p (MIRT519314)
- hsa-miR-4438 (MIRT519315)
- hsa-miR-6876-5p (MIRT552226)
- hsa-miR-4476 (MIRT552227)
- hsa-miR-3941 (MIRT607142)
- hsa-miR-4789-3p (MIRT607143)
- hsa-miR-603 (MIRT607144)
- hsa-miR-362-3p (MIRT607145)
- hsa-miR-329-3p (MIRT607146)
- hsa-miR-8485 (MIRT607147)
- hsa-miR-377-3p (MIRT608492)
- hsa-miR-6884-3p (MIRT608493)
- hsa-miR-744-3p (MIRT627007)
- hsa-miR-106a-3p (MIRT627008)
- hsa-miR-4423-5p (MIRT627009)
- hsa-miR-6501-5p (MIRT627010)
- hsa-miR-4430 (MIRT627011)
- hsa-miR-3652 (MIRT627012)
- hsa-miR-122-5p (MIRT627013)
- hsa-miR-504-3p (MIRT627014)
- hsa-miR-3135b (MIRT627015)
- hsa-miR-454-3p (MIRT627016)
- hsa-miR-4295 (MIRT627017)
- hsa-miR-3666 (MIRT627018)
- hsa-miR-301b-3p (MIRT627019)
- hsa-miR-301a-3p (MIRT627020)
- hsa-miR-130b-3p (MIRT627021)
- hsa-miR-130a-3p (MIRT627022)
- hsa-miR-498 (MIRT638022)
- hsa-miR-4279 (MIRT638023)
- hsa-miR-6778-3p (MIRT638024)
- hsa-miR-1976 (MIRT638025)
- hsa-miR-3653-5p (MIRT638026)
- hsa-miR-325 (MIRT638027)
- hsa-miR-6747-3p (MIRT638028)
- hsa-miR-6727-3p (MIRT638029)
- hsa-miR-4722-3p (MIRT638030)
- hsa-miR-6809-3p (MIRT715157)
- hsa-miR-6833-3p (MIRT715158)
- hsa-miR-4768-5p (MIRT715159)
- hsa-miR-6873-3p (MIRT715160)
- hsa-miR-4778-3p (MIRT715161)
- hsa-miR-6787-3p (MIRT715162)
- hsa-miR-1284 (MIRT715163)
- hsa-miR-545-3p (MIRT715164)
miRNA products for research
Inhibitory RNAs for research
- Origene shrna, sirna, and RNAi products in human, mouse, rat for FIG4
- Browse OriGene Inhibitory RNA Products For FIG4
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for FIG4
Clone products for research
- Applied Biological Materials (abm): Clones for FIG4 - Starting at $45 >
- * FIG4 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Sino Biological Human cDNA Clone for FIG4
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for FIG4
Cell Lines for research
-
Horizon Cell Lines for FIG4
No data available for Animal Models , Transcription Factor Targets and HOMER Transcription for FIG4 Gene
Localization for FIG4 Gene
Subcellular locations from UniProtKB/Swiss-Prot for FIG4 Gene
- Endosome membrane. Note=Localization requires VAC14 and PIKFYVE.
| Compartment | Confidence |
|---|---|
| endosome | 5 |
| golgi apparatus | 4 |
| plasma membrane | 2 |
| cytoskeleton | 2 |
| mitochondrion | 2 |
| nucleus | 2 |
| endoplasmic reticulum | 2 |
| cytosol | 2 |
| lysosome | 2 |
| extracellular | 1 |
| peroxisome | 1 |
- Vesicles (3)
- Lipid droplets (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | -- |
| GO:0005768 | endosome | IEA | -- |
| GO:0005783 | endoplasmic reticulum | IDA | -- |
| GO:0005794 | Golgi apparatus | IDA | -- |
| GO:0005811 | lipid droplet | IDA | -- |
Pathways & Interactions for FIG4 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | PI Metabolism |
.63
|
|
| 2 | superpathway of inositol phosphate compounds | ||
| 3 | Metabolism |
.40
|
|
| 4 | Pathways of neurodegeneration - multiple diseases | ||
| 5 | Glycerophospholipid biosynthesis | ||
Pathways by source for FIG4 Gene
2 BioSystems pathways for FIG4 Gene
7 Reactome pathways for FIG4 Gene
4 KEGG pathways for FIG4 Gene
Interacting Proteins for FIG4 Gene
Selected Interacting proteins:
Q92562-FIG4_HUMAN
ENSP00000230124
for FIG4 Gene via
UniProtKB
MINT
STRING
IID
GPS-Prot Interaction Network for FIG4
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006661 | phosphatidylinositol biosynthetic process | TAS | -- |
| GO:0007033 | vacuole organization | IMP | -- |
| GO:0007626 | locomotory behavior | IMP | -- |
| GO:0010976 | positive regulation of neuron projection development | IMP | -- |
| GO:0031642 | negative regulation of myelination | IMP | -- |
Transcripts for FIG4 Gene
mRNA/cDNA for FIG4 Gene
- 1 REFSEQ mRNAs :
- 11 NCBI additional mRNA sequence :
- 63 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000230124 3025 nts (view in UCSC)
- ENST00000368941 1158 nts (view in UCSC)
- ENST00000415980 1712 nts (view in UCSC)
- ENST00000419951 846 nts (view in UCSC)
- ENST00000454215 1129 nts (view in UCSC)
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for FIG4 - Starting at $85 >
- * FIG4 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for FIG4
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for FIG4
-
Santa Cruz Biotechnology (SCBT) CRISPR for FIG4
miRNA products for research
Inhibitory RNAs for research
- Origene shrna, sirna, and RNAi products in human, mouse, rat for FIG4
- Browse OriGene Inhibitory RNA Products For FIG4
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for FIG4
Clone products for research
- Applied Biological Materials (abm): Clones for FIG4 - Starting at $45 >
- * FIG4 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Sino Biological Human cDNA Clone for FIG4
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for FIG4
Relevant External Links for FIG4 Gene
- GeneLoc Exon Structure for
- FIG4
Expression for FIG4 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Cartilage (Muscoskeletal System)
- Intervertebral Disc Nucleus Pulposus Cells Nucleus Pulposus
- Nucleus Pulposus
- Primitive Streak (Early Embryonic Tissues)
This gene is overexpressed in Pancreatic juice (15.7), Bone (15.3), and Platelet (9.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for FIG4 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FIG4
SOURCE GeneReport for Unigene cluster for FIG4 Gene:
Hs.529959Evidence on tissue expression from TISSUES for FIG4 Gene
- Nervous system(4.9)
- Intestine(4.3)
- Kidney(2.1)
- Muscle(2.1)
- Skin(2)
Phenotype-based relationships between genes and organs from Gene ORGANizer for FIG4 Gene
Germ Layers:
- ectoderm
- endoderm
- mesoderm
Systems:
- cardiovascular
- digestive
- immune
- integumentary
- lymphatic
- nervous
- reproductive
- respiratory
- skeletal muscle
- skeleton
- urinary
Regions:
Head and neck:
- brain
- cerebellum
- cheek
- chin
- cranial nerve
- ear
- epiglottis
- eye
- eyelid
- face
- forehead
- head
- jaw
- larynx
- lip
- mandible
- maxilla
- mouth
- neck
- nose
- olfactory bulb
- outer ear
- pharynx
- scalp
- skull
- tongue
- tooth
- vocal cord
Thorax:
- breast
- bronchus
- chest wall
- clavicle
- esophagus
- heart
- heart valve
- lung
- rib
- rib cage
- scapula
- sternum
- thymus
- trachea
Abdomen:
- biliary tract
- kidney
- liver
- spleen
- stomach
Pelvis:
- pelvis
- penis
- placenta
- testicle
- urethra
- uterus
Limb:
- ankle
- arm
- digit
- femur
- finger
- foot
- forearm
- hand
- hip
- humerus
- lower limb
- nail
- shin
- shoulder
- thigh
- toe
- upper limb
General:
- blood
- blood vessel
- bone marrow
- coagulation system
- hair
- peripheral nerve
- peripheral nervous system
- red blood cell
- skin
- spinal cord
- white blood cell
Primer products for research
-
OriGene qPCR primer pairs for FIG4
-
OriGene qPCR primer pairs and template standards for FIG4
Gene Expression Assays for research
No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FIG4 Gene
Orthologs for FIG4 Gene
This gene was present in the common ancestor of animals and fungi.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | FIG4 29 30 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | FIG4 29 30 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | FIG4 30 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | FIG4 29 30 |
|
OneToOne | |
| Mouse (Mus musculus) |
Mammalia | Fig4 29 16 30 |
|
OneToOne | |
| Rat (Rattus norvegicus) |
Mammalia | Fig4 29 |
|
||
| Platypus (Ornithorhynchus anatinus) |
Mammalia | FIG4 30 |
|
OneToOne | |
| Chicken (Gallus gallus) |
Aves | FIG4 29 30 |
|
OneToOne | |
| Lizard (Anolis carolinensis) |
Reptilia | FIG4 30 |
|
OneToOne | |
| Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | fig4 29 |
|
||
| Zebrafish (Danio rerio) |
Actinopterygii | FIG4 (2 of 2) 30 |
|
OneToMany | |
| FIG4 (1 of 2) 30 |
|
OneToMany | |||
| fig4 29 |
|
||||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP004477 29 |
|
||
| Fruit Fly (Drosophila melanogaster) |
Insecta | CG17840 29 30 |
|
OneToOne | |
| Worm (Caenorhabditis elegans) |
Secernentea | C34B7.2 30 |
|
OneToOne | |
| Baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | FIG4 29 30 32 |
|
OneToOne | |
| K. Lactis Yeast (Kluyveromyces lactis) |
Saccharomycetes | KLLA0E02113g 29 |
|
||
| A. gosspyii yeast (Eremothecium gossypii) |
Saccharomycetes | AGOS_ADL195C 29 |
|
||
| Sea Squirt (Ciona savignyi) |
Ascidiacea | -- 30 |
|
OneToOne | |
| Bread mold (Neurospora crassa) |
Ascomycetes | NCU08689 29 |
|
||
| Fission Yeast (Schizosaccharomyces pombe) |
Schizosaccharomycetes | SPAC1093.03 29 |
|
- Species where no ortholog for FIG4 was found in the sources mined by GeneCards:
-
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Wheat (Triticum aestivum)
Evolution for FIG4 Gene
- ENSEMBL:
- Gene Tree for FIG4 (if available)
- TreeFam:
- Gene Tree for FIG4 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for FIG4: view image
- Alliance of Genome Resources:
- Additional Orthologs for FIG4
Paralogs for FIG4 Gene
Variants for FIG4 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for FIG4 Gene
| SNP ID | Clinical significance and condition | Chr 06 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 1000151 | Uncertain Significance: Charcot-Marie-Tooth disease type 4 | 109,776,972(+) |
A/G NM_014845.6(FIG4):c.1801A>G (p.Thr601Ala) |
MISSENSE | |
| 1000677 | Uncertain Significance: Charcot-Marie-Tooth disease type 4 | 109,762,195(+) |
G/A NM_014845.6(FIG4):c.1376G>A (p.Arg459Gln) |
MISSENSE | |
| 1000729 | Uncertain Significance: Charcot-Marie-Tooth disease type 4 | 109,727,269(+) |
T/A NM_014845.6(FIG4):c.446+4T>A |
INTRON | |
| 1001613 | Uncertain Significance: Charcot-Marie-Tooth disease type 4 | 109,743,275(+) |
G/A NM_014845.6(FIG4):c.1039+3G>A |
INTRON | |
| 1002371 | Uncertain Significance: Charcot-Marie-Tooth disease type 4 | 109,796,755(+) |
T/C NM_014845.6(FIG4):c.2460-10T>C |
INTRON |
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3306678 | CNV | mobile element insertion | 20981092 |
| esv3308396 | CNV | mobile element insertion | 20981092 |
| esv3419021 | CNV | insertion | 20981092 |
| esv3435539 | CNV | duplication | 20981092 |
| esv3436310 | CNV | insertion | 20981092 |
| esv3438966 | CNV | insertion | 20981092 |
| nsv1019690 | CNV | gain | 25217958 |
| nsv5436 | CNV | deletion | 18451855 |
| nsv5437 | CNV | insertion | 18451855 |
| nsv604485 | CNV | loss | 21841781 |
| nsv830769 | CNV | gain | 17160897 |
Residual Variation Intolerance Score:
5.15% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
9.35;
88.40% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for FIG4 Gene
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FIG4 Gene
Disorders for FIG4 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| polymicrogyria, bilateral temporooccipital |
|
|
| charcot-marie-tooth disease, type 4j |
|
|
| yunis-varon syndrome |
|
|
| amyotrophic lateral sclerosis 11 |
|
|
| amyotrophic lateral sclerosis 1 |
|
Search FIG4 in MalaCards
View complete list of genes associated with diseases
UniProtKB/Swiss-Prot
FIG4_HUMAN- Charcot-Marie-Tooth disease 4J (CMT4J) [MIM:611228]: A recessive demyelinating form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Demyelinating neuropathies are characterized by severely reduced nerve conduction velocities (less than 38 m/sec), segmental demyelination and remyelination with onion bulb formations on nerve biopsy, slowly progressive distal muscle atrophy and weakness, absent deep tendon reflexes, and hollow feet. By convention autosomal recessive forms of demyelinating Charcot-Marie-Tooth disease are designated CMT4. {ECO:0000269 PubMed:17572665, ECO:0000269 PubMed:21655088, ECO:0000269 PubMed:21705420}. Note=The disease is caused by variants affecting the gene represented in this entry.
- Amyotrophic lateral sclerosis 11 (ALS11) [MIM:612577]: A neurodegenerative disorder affecting upper motor neurons in the brain and lower motor neurons in the brain stem and spinal cord, resulting in fatal paralysis. Sensory abnormalities are absent. The pathologic hallmarks of the disease include pallor of the corticospinal tract due to loss of motor neurons, presence of ubiquitin-positive inclusions within surviving motor neurons, and deposition of pathologic aggregates. The etiology of amyotrophic lateral sclerosis is likely to be multifactorial, involving both genetic and environmental factors. The disease is inherited in 5-10% of the cases. {ECO:0000269 PubMed:19118816}. Note=The disease is caused by variants affecting the gene represented in this entry.
- Yunis-Varon syndrome (YVS) [MIM:216340]: A severe autosomal recessive disorder characterized by skeletal defects, including cleidocranial dysplasia and digital anomalies, and severe neurologic involvement with neuronal loss. Enlarged cytoplasmic vacuoles are found in neurons, muscle, and cartilage. The disorder is usually lethal in infancy. {ECO:0000269 PubMed:23623387}. Note=The disease is caused by variants affecting the gene represented in this entry.
- Polymicrogyria, bilateral temporooccipital (BTOP) [MIM:612691]: A disease characterized by temporo-occipital polymicrogyria, psychiatric manifestations, and epilepsy. {ECO:0000269 PubMed:24598713}. Note=The disease is caused by variants affecting the gene represented in this entry.
Additional Disease Information for FIG4
- Human Genome Epidemiology Navigator
- (HuGE)
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for Genatlas for FIG4 Gene
Publications for FIG4 Gene
- Role of the phosphoinositide phosphatase FIG4 gene in familial epilepsy with polymicrogyria. (PMID: 24598713) Baulac S … Leguern E (Neurology 2014) 3 4 72
- Yunis-Varón syndrome is caused by mutations in FIG4, encoding a phosphoinositide phosphatase. (PMID: 23623387) Campeau PM … Lee BH (American journal of human genetics 2013) 3 4 72
- Distinctive genetic and clinical features of CMT4J: a severe neuropathy caused by mutations in the PI(3,5)P₂ phosphatase FIG4. (PMID: 21705420) Nicholson G … Meisler MH (Brain : a journal of neurology 2011) 3 4 72
- Deleterious variants of FIG4, a phosphoinositide phosphatase, in patients with ALS. (PMID: 19118816) Chow CY … Meisler MH (American journal of human genetics 2009) 3 4 72
- Mutation of FIG4 causes neurodegeneration in the pale tremor mouse and patients with CMT4J. (PMID: 17572665) Chow CY … Meisler MH (Nature 2007) 2 3 4
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