Aliases for FHAD1-AS1 Gene

Subcategory (RNA class) for FHAD1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for FHAD1-AS1 Gene

  • FHAD1 Antisense RNA 1 2 3
  • Novel Transcript 5
  • NONHSAG000430 94
  • Lnc-CASP9-3 170
  • AL031283.2 5

External Ids for FHAD1-AS1 Gene

Summaries for FHAD1-AS1 Gene

GeneCards Summary for FHAD1-AS1 Gene

FHAD1-AS1 (FHAD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FHAD1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FHAD1-AS1 Gene

Genomics for FHAD1-AS1 Gene

GeneHancer (GH) Regulatory Elements for FHAD1-AS1 Gene

Promoters and enhancers for FHAD1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J015341 Enhancer 0.7 ENCODE 750.6 +2.0 1964 1.6 MYC MAX ZNF121 SMARCC1 SMARCC2 SMARCA4 CEBPB JUND ZBTB20 FOS FHAD1-AS1 ENSG00000236045 FHAD1
GH01J015343 Promoter 0.4 Ensembl 750.6 +0.3 279 0.6 TRIM25 FHAD1-AS1 ENSG00000236045 FHAD1
GH01J015345 Enhancer 0.3 ENCODE 750.6 -0.8 -787 0.1 ZBTB40 FHAD1-AS1 piR-57133-007 FHAD1
GH01J015406 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 -68.6 -68554 11.5 SP1 ZBTB40 SMARCE1 POLR2A HDAC2 MYC ETV6 ELF1 RELA L3MBTL2 EFHD2 SPEN ENSG00000228140 CTRC FHAD1-AS1 ENSG00000237938 FHAD1 RPL22P3 ENSG00000178715 FBXO42
GH01J015245 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 14.4 +97.3 97270 2.6 L3MBTL2 ZNF121 MNT ZNF280D NKRF SP7 ZNF687 KLF14 GLIS2 ZIC2 FHAD1 FHAD1-AS1 PLEKHM2 TMEM51 EFHD2 CASP9 RF00017-069
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FHAD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FHAD1-AS1 Gene

Genomic Locations for FHAD1-AS1 Gene
chr1:15,326,680-15,343,980
(GRCh38/hg38)
Size:
17,301 bases
Orientation:
Minus strand
chr1:15,653,176-15,670,372
(GRCh37/hg19)
Size:
17,197 bases
Orientation:
Minus strand

Genomic View for FHAD1-AS1 Gene

Genes around FHAD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FHAD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FHAD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FHAD1-AS1 Gene

Proteins for FHAD1-AS1 Gene

Post-translational modifications for FHAD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FHAD1-AS1 Gene

Domains & Families for FHAD1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FHAD1-AS1 Gene

Function for FHAD1-AS1 Gene

Phenotypes From GWAS Catalog for FHAD1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FHAD1-AS1 Gene

Localization for FHAD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FHAD1-AS1 Gene

Pathways & Interactions for FHAD1-AS1 Gene

PathCards logo

SuperPathways for FHAD1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FHAD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FHAD1-AS1 Gene

Drugs & Compounds for FHAD1-AS1 Gene

No Compound Related Data Available

Transcripts for FHAD1-AS1 Gene

mRNA/cDNA for FHAD1-AS1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for FHAD1-AS1 Gene

No ASD Table

Relevant External Links for FHAD1-AS1 Gene

GeneLoc Exon Structure for
FHAD1-AS1
ECgene alternative splicing isoforms for
FHAD1-AS1

Expression for FHAD1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FHAD1-AS1 Gene

Orthologs for FHAD1-AS1 Gene

Evolution for FHAD1-AS1 Gene

ENSEMBL:
Gene Tree for FHAD1-AS1 (if available)
TreeFam:
Gene Tree for FHAD1-AS1 (if available)

No data available for Orthologs for FHAD1-AS1 Gene

Paralogs for FHAD1-AS1 Gene

No data available for Paralogs for FHAD1-AS1 Gene

Variants for FHAD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FHAD1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000063159 -- 15,334,086(-) A/G/T intron_variant
rs1000090748 -- 15,337,553(-) T/C intron_variant
rs1000095550 -- 15,334,318(-) G/A intron_variant
rs1000178066 -- 15,326,266(-) C/T downstream_transcript_variant
rs1000558001 -- 15,338,148(-) T/A intron_variant

Additional Variant Information for FHAD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FHAD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FHAD1-AS1 Gene

Disorders for FHAD1-AS1 Gene

No disorders were found for FHAD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FHAD1-AS1 Gene

Publications for FHAD1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for FHAD1-AS1 Gene

Products for FHAD1-AS1 Gene

Sources for FHAD1-AS1 Gene