Aliases for FGF10-AS1 Gene

Data sources for FGF10-AS1 Gene:

RNA type for FGF10-AS1 Gene

lncRNA

Aliases for FGF10-AS1 Gene

External Ids for FGF10-AS1 Gene

Summaries for FGF10-AS1 Gene

GeneCards Summary for FGF10-AS1 Gene

FGF10-AS1 (FGF10 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FGF10-AS1 include Ventricular Septal Defect.

Additional gene information for FGF10-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FGF10-AS1 Gene

Genomics for FGF10-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FGF10-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J044387 Promoter/Enhancer 1.8 VISTA EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.4 -430 4.6 SIN3A EGR2 EZH2 PRDM10 ZFHX2 PRDM1 FGF10 FGF10-AS1 HSALNG0041536 NNT
GH05J043482 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.1 -903.8 -903832 5.8 BCLAF1 ZNF207 ZNF654 MYC ZNF600 ZNF580 ZNF592 POLR2A CEBPA ZNF10 TMEM267 ENSG00000249492 C5orf34-AS1 lnc-TMEM267-1 ZNF131 EEF1A1P19 RPL29P12 C5orf34 NNT CCL28
GH05J043553 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.8 -832.6 -832631 4.6 IKZF1 MYC ZNF600 ZNF580 ZNF592 POLR2A BRCA1 NFIC ZBTB10 NONO PAIP1 RF00017-4151 NNT ENSG00000248240 C5orf34 EEF1A1P19 NNT-AS1 RPL29P12 ENSG00000249492 FGF10-AS1
GH05J043771 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10 -615.7 -615731 3.2 JUND ZNF592 NFIC CEBPB MAX ARNT EP300 RFX5 TAL1 ELF1 HSALNG0041529 TMEM267 ZNF131 NNT-AS1 ENSG00000249492 PAIP1 FGF10-AS1 NNT piR-56883-140 FGF10
GH05J044331 Enhancer 0.5 Ensembl 11 -56.7 -56730 1.6 ZNF654 CEBPB CTCF RAD21 RFX5 SMC3 TRIM22 FGF10 FGF10-AS1 HSALNG0041536 NNT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FGF10-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FGF10-AS1 Gene

Latest Assembly
chr5:44,388,731-44,541,606
(GRCh38/hg38)
Size:
152,876 bases
Orientation:
Plus strand

Previous Assembly
chr5:44,388,834-44,414,091
(GRCh37/hg19 by Entrez Gene)
Size:
25,258 bases
Orientation:
Plus strand

chr5:44,388,834-44,414,091
(GRCh37/hg19 by Ensembl)
Size:
25,258 bases
Orientation:
Plus strand

Genomic View for FGF10-AS1 Gene

Genes around FGF10-AS1 on UCSC Golden Path with GeneCards custom track
FGF10-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FGF10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGF10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGF10-AS1 Gene

Proteins for FGF10-AS1 Gene

Post-translational modifications for FGF10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGF10-AS1 Gene

Domains & Families for FGF10-AS1 Gene

Gene Families for FGF10-AS1 Gene

genes like me logo Genes that share domains with FGF10-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FGF10-AS1 Gene

Function for FGF10-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGF10-AS1 Gene

Localization for FGF10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FGF10-AS1 Gene

Pathways & Interactions for FGF10-AS1 Gene

PathCards logo

SuperPathways for FGF10-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FGF10-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FGF10-AS1 Gene

Drugs & Compounds for FGF10-AS1 Gene

No Compound Related Data Available

Transcripts for FGF10-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FGF10-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00001CD8A7_9606 lncRNA 1897 3

Ensembl: ENST00000502457 (view in UCSC) ,

LNCipedia: FGF10-AS1:1,

NONCODE: NONHSAT101331.2,

URS000075E1B4_9606 lncRNA 1894 1

RefSeq: NR_108034,

URS00009BA60A_9606 lncRNA 1894 2

LncBook: HSALNT0087328,

NONCODE: NONHSAT202562.1,

URS0000EB5567_9606 lncRNA 2795 1

LncBook: HSALNT0087329,

URS0001BE346A_9606 lncRNA 2795 1

LncBook: HSALNT0087329,

FGF10-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FGF10-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FGF10-AS1 Gene

No ASD Table

Relevant External Links for FGF10-AS1 Gene

GeneLoc Exon Structure for
FGF10-AS1

Expression for FGF10-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FGF10-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FGF10-AS1 Gene

This gene is overexpressed in Cervix - Endocervix (x5.0), Cervix - Ectocervix (x4.7), and Adipose - Visceral (Omentum) (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FGF10-AS1

genes like me logo Genes that share expression patterns with FGF10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FGF10-AS1 Gene

Orthologs for FGF10-AS1 Gene

Evolution for FGF10-AS1 Gene

ENSEMBL:
Gene Tree for FGF10-AS1 (if available)
TreeFam:
Gene Tree for FGF10-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for FGF10-AS1

No data available for Orthologs for FGF10-AS1 Gene

Paralogs for FGF10-AS1 Gene

No data available for Paralogs for FGF10-AS1 Gene

Variants for FGF10-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FGF10-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for FGF10-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830277 CNV gain 17160897

Additional Variant Information for FGF10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGF10-AS1
Leiden Open Variation Database (LOVD)
FGF10-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FGF10-AS1 Gene

Disorders for FGF10-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FGF10-AS1 Gene - From: LNC, COP, and GCD

Disorder Aliases PubMed IDs
ventricular septal defect
  • interventricular septal defect
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FGF10-AS1

genes like me logo Genes that share disorders with FGF10-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FGF10-AS1 Gene

Publications for FGF10-AS1 Gene

  1. Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect. (PMID: 24147006) Song G … Qian L (PloS one 2013) 2 3 72

Products for FGF10-AS1 Gene

Sources for FGF10-AS1 Gene