Aliases for FGD6 Gene

Aliases for FGD6 Gene

  • FYVE, RhoGEF And PH Domain Containing 6 2 3 5
  • FYVE, RhoGEF And PH Domain-Containing Protein 6 3 4
  • Zinc Finger FYVE Domain-Containing Protein 24 3 4
  • ZFYVE24 3 4
  • KIAA1362 4

External Ids for FGD6 Gene

Previous GeneCards Identifiers for FGD6 Gene

  • GC12M093976
  • GC12M095470
  • GC12M092538

Summaries for FGD6 Gene

GeneCards Summary for FGD6 Gene

FGD6 (FYVE, RhoGEF And PH Domain Containing 6) is a Protein Coding gene. Diseases associated with FGD6 include Aarskog-Scott Syndrome. Gene Ontology (GO) annotations related to this gene include guanyl-nucleotide exchange factor activity and small GTPase binding. An important paralog of this gene is FGD5.

UniProtKB/Swiss-Prot Summary for FGD6 Gene

  • May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape (By similarity).

Additional gene information for FGD6 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FGD6 Gene

Genomics for FGD6 Gene

GeneHancer (GH) Regulatory Elements for FGD6 Gene

Promoters and enhancers for FGD6 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J095211 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 762.8 +1.3 1285 8.7 SIN3A SP1 CTCF SIX5 ZBTB6 MLX POLR2A USF2 ATF1 CREB1 FGD6 VEZT USP44 ENSG00000258313 METAP2 NR2C1 SNRPF lnc-NR2C1-5
GH12J095114 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 37.9 +100.4 100444 5.7 CTCF POLR2A MIXL1 ZNF362 CC2D1A RAD21 POU5F1 ZNF384 MAFK HNF1A RF00017-1210 FGD6 VEZT NDUFA12 hsa-miR-1273e-016
GH12J095172 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 21.9 +41.5 41504 7.2 SIN3A SMARCE1 RUNX1 ZNF133 CC2D1A L3MBTL2 DACH1 ZNF121 TEAD4 CBFA2T2 FGD6 VEZT NDUFA12 NR2C1 ENSG00000241556 lnc-NR2C1-5 ENSG00000237774
GH12J095102 Enhancer 1.3 Ensembl ENCODE dbSUPER 22 +114.2 114216 2.5 SIN3A SP1 ZBTB6 TCF7L2 ZNF362 JUND MYC ETV6 RELA MNT hsa-miR-1273e-016 FGD6 VEZT RNU6-808P RF00017-1210
GH12J095131 Enhancer 0.7 Ensembl ENCODE 31 +85.1 85081 2.8 SP1 ZNF680 CEBPG ZBTB8A ZNF24 ZNF140 ZNF623 ZC3H11A CEBPB ZFP64 FGD6 NR2C1 VEZT ENSG00000258365 SNRPF ENSG00000237774 lnc-NR2C1-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FGD6 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FGD6 gene promoter:
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • FOXJ2
  • FOXJ2 (long isoform)
  • LCR-F1
  • Pbx1a

Genomic Locations for FGD6 Gene

Genomic Locations for FGD6 Gene
140,734 bases
Minus strand
140,734 bases
Minus strand

Genomic View for FGD6 Gene

Genes around FGD6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGD6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGD6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGD6 Gene

Proteins for FGD6 Gene

  • Protein details for FGD6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    FYVE, RhoGEF and PH domain-containing protein 6
    Protein Accession:
    Secondary Accessions:
    • Q6ZR53
    • Q7Z2Z7
    • Q96D44
    • Q9NUR8
    • Q9P2I5

    Protein attributes for FGD6 Gene

    1430 amino acids
    Molecular mass:
    160816 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAA92052.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAA92600.1; Type=Frameshift; Positions=1365; Evidence={ECO:0000305}; Sequence=BAC87464.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAD98096.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

    Alternative splice isoforms for FGD6 Gene


neXtProt entry for FGD6 Gene

Post-translational modifications for FGD6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FGD6 Gene

No data available for DME Specific Peptides for FGD6 Gene

Domains & Families for FGD6 Gene

Suggested Antigen Peptide Sequences for FGD6 Gene

GenScript: Design optimal peptide antigens:
  • FGD6 protein (A4FVC4_HUMAN)
  • Zinc finger FYVE domain-containing protein 24 (FGD6_HUMAN)
genes like me logo Genes that share domains with FGD6: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FGD6 Gene

Function for FGD6 Gene

Molecular function for FGD6 Gene

UniProtKB/Swiss-Prot Function:
May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape (By similarity).

Phenotypes From GWAS Catalog for FGD6 Gene

Gene Ontology (GO) - Molecular Function for FGD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005085 guanyl-nucleotide exchange factor activity IEA,ISS --
GO:0005089 Rho guanyl-nucleotide exchange factor activity IEA --
GO:0031267 small GTPase binding ISS --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with FGD6: view
genes like me logo Genes that share phenotypes with FGD6: view

Animal Model Products

CRISPR Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FGD6 Gene

Localization for FGD6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FGD6 Gene

Cytoplasm. Cytoplasm, cytoskeleton.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FGD6 gene
Compartment Confidence
golgi apparatus 4
cytoskeleton 3
cytosol 3
nucleus 2
endosome 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for FGD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001726 ruffle ISS --
GO:0005737 cytoplasm ISS --
GO:0005794 Golgi apparatus ISS --
GO:0005856 cytoskeleton IEA --
GO:0030027 lamellipodium ISS --
genes like me logo Genes that share ontologies with FGD6: view

Pathways & Interactions for FGD6 Gene

PathCards logo

SuperPathways for FGD6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FGD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007010 cytoskeleton organization ISS --
GO:0008360 regulation of cell shape ISS --
GO:0030036 actin cytoskeleton organization ISS --
GO:0035023 regulation of Rho protein signal transduction IEA --
GO:0043087 regulation of GTPase activity IEA,ISS --
genes like me logo Genes that share ontologies with FGD6: view

No data available for Pathways by source and SIGNOR curated interactions for FGD6 Gene

Drugs & Compounds for FGD6 Gene

(1) Drugs for FGD6 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanosine triphosphate Experimental Pharma 0
genes like me logo Genes that share compounds with FGD6: view

Transcripts for FGD6 Gene

mRNA/cDNA for FGD6 Gene

CRISPR Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FGD6 Gene

No ASD Table

Relevant External Links for FGD6 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for FGD6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FGD6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for FGD6 Gene

This gene is overexpressed in Urine (58.1) and Bone marrow mesenchymal stem cell (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for FGD6 Gene

Protein tissue co-expression partners for FGD6 Gene

NURSA nuclear receptor signaling pathways regulating expression of FGD6 Gene:


SOURCE GeneReport for Unigene cluster for FGD6 Gene:


Evidence on tissue expression from TISSUES for FGD6 Gene

  • Heart(4.2)
  • Nervous system(4.2)
genes like me logo Genes that share expression patterns with FGD6: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for FGD6 Gene

Orthologs for FGD6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FGD6 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia FGD6 33 32
  • 99.23 (n)
(Canis familiaris)
Mammalia FGD6 33 32
  • 89.18 (n)
(Bos Taurus)
Mammalia FGD6 33 32
  • 87.64 (n)
(Mus musculus)
Mammalia Fgd6 17 33 32
  • 80.02 (n)
(Rattus norvegicus)
Mammalia Fgd6 32
  • 79.77 (n)
(Monodelphis domestica)
Mammalia FGD6 33
  • 67 (a)
(Ornithorhynchus anatinus)
Mammalia FGD6 33
  • 66 (a)
(Gallus gallus)
Aves FGD6 33 32
  • 67.56 (n)
(Anolis carolinensis)
Reptilia FGD6 33
  • 60 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia fgd6 32
  • 75.54 (n)
Str.19905 32
African clawed frog
(Xenopus laevis)
Amphibia Xl.13659 32
(Danio rerio)
Actinopterygii fgd6 33 32
  • 55.64 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.7916 32
Species where no ortholog for FGD6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FGD6 Gene

Gene Tree for FGD6 (if available)
Gene Tree for FGD6 (if available)
Evolutionary constrained regions (ECRs) for FGD6: view image

Paralogs for FGD6 Gene

Paralogs for FGD6 Gene

(5) SIMAP similar genes for FGD6 Gene using alignment to 6 proteins:

  • F8VY01_HUMAN
  • H0YI21_HUMAN
genes like me logo Genes that share paralogs with FGD6: view

Variants for FGD6 Gene

Sequence variations from dbSNP and Humsavar for FGD6 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000009001 -- 95,139,344(-) G/A intron_variant
rs1000009785 -- 95,185,148(-) A/G intron_variant
rs1000035307 -- 95,127,331(-) G/A intron_variant
rs1000056515 -- 95,087,746(-) C/G intron_variant
rs1000067534 -- 95,216,486(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FGD6 Gene

Variant ID Type Subtype PubMed ID
esv2746232 CNV deletion 23290073
esv2762998 CNV gain 21179565
esv3396190 CNV insertion 20981092
esv3630427 CNV loss 21293372
esv3630428 CNV loss 21293372
esv3630429 CNV loss 21293372
nsv1040859 CNV gain 25217958
nsv526515 CNV loss 19592680
nsv53566 CNV deletion 16902084
nsv7234 OTHER inversion 18451855
nsv952466 CNV duplication 24416366
nsv957918 CNV deletion 24416366

Variation tolerance for FGD6 Gene

Residual Variation Intolerance Score: 73.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.09; 75.41% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for FGD6 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FGD6 Gene

Disorders for FGD6 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FGD6 Gene - From: HGMD and DISEASES

Disorder Aliases PubMed IDs
aarskog-scott syndrome
  • aas
- elite association - COSMIC cancer census association via MalaCards
Search FGD6 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for FGD6

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with FGD6: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FGD6 Gene

Publications for FGD6 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 56
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 56
  3. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2000) 3 4 56
  4. The Functional Proximal Proteome of Oncogenic Ras Includes mTORC2. (PMID: 30639242) Kovalski JR … Khavari PA (Molecular cell 2019) 3 56
  5. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3 56

Products for FGD6 Gene

Sources for FGD6 Gene