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Aliases for FGD5-AS1 Gene

Subcategory (RNA class) for FGD5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FGD5-AS1 Gene

  • FGD5 Antisense RNA 1 2 3 5
  • FGD5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FGD5-AS1 Gene

Summaries for FGD5-AS1 Gene

GeneCards Summary for FGD5-AS1 Gene

FGD5-AS1 (FGD5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FGD5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGD5-AS1 Gene

Genomics for FGD5-AS1 Gene

GeneHancer (GH) Regulatory Elements for FGD5-AS1 Gene

Promoters and enhancers for FGD5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I014946 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 561.3 -0.1 -136 4.7 PKNOX1 CLOCK SMAD1 ARID4B NEUROD1 SIN3A DMAP1 ZBTB7B YY1 SLC30A9 NR2C2 FGD5-AS1 CCDC174 SH3BP5-AS1 ENSG00000228242 CAPN7 EAF1-AS1 HACL1 XPC METTL6
GH03I015063 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 9.5 -116.1 -116092 2.9 HDGF PKNOX1 SMAD1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B MRPS25 PIRC12 SH3BP5-AS1 CCDC174 ENSG00000228242 NR2C2 XPC FGD5-AS1 GC03M015052 PIR50374
GH03I015097 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 7 -150.4 -150394 2.4 CLOCK MLX ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 GC03M015143 RBSN NR2C2 CCDC174 SH3BP5-AS1 CAPN7 ENSG00000228242 XPC MRPS25 HACL1
GH03I014288 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.3 +658.1 658128 3.6 HDGF PKNOX1 ATF1 ZBTB7B TCF12 ARID2 FOS ATF7 MCM5 REST CCDC174 LINC01267 FGD5-AS1 XPC SLC6A6 ENSG00000228242 ENSG00000255021 LOC105376958
GH03I015049 Enhancer 1 ENCODE 9.9 -103.3 -103318 3.5 HDGF PKNOX1 SMAD1 ARNT IRF4 ZNF766 ZNF143 ZNF592 MEF2D SMARCA4 PIR32672 PIR50374 PIR51108 PIR43410 PIR37417 GC03M015052 CAPN7 COL6A4P1 FGD5-AS1 PIRC12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FGD5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FGD5-AS1 Gene

Genomic Locations for FGD5-AS1 Gene
chr3:14,920,347-14,948,441
(GRCh38/hg38)
Size:
28,095 bases
Orientation:
Minus strand
chr3:14,961,854-14,989,931
(GRCh37/hg19)

Genomic View for FGD5-AS1 Gene

Genes around FGD5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGD5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGD5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGD5-AS1 Gene

Proteins for FGD5-AS1 Gene

Post-translational modifications for FGD5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGD5-AS1 Gene

Domains & Families for FGD5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGD5-AS1 Gene

Function for FGD5-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGD5-AS1 Gene

Localization for FGD5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FGD5-AS1 Gene

Pathways & Interactions for FGD5-AS1 Gene

SuperPathways for FGD5-AS1 Gene

No Data Available

Interacting Proteins for FGD5-AS1 Gene

Gene Ontology (GO) - Biological Process for FGD5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FGD5-AS1 Gene

Drugs & Compounds for FGD5-AS1 Gene

No Compound Related Data Available

Transcripts for FGD5-AS1 Gene

mRNA/cDNA for FGD5-AS1 Gene

(10) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FGD5-AS1 Gene

FGD5 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FGD5-AS1 Gene

No ASD Table

Relevant External Links for FGD5-AS1 Gene

GeneLoc Exon Structure for
FGD5-AS1
ECgene alternative splicing isoforms for
FGD5-AS1

Expression for FGD5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FGD5-AS1 Gene

SOURCE GeneReport for Unigene cluster for FGD5-AS1 Gene:

Hs.517821
genes like me logo Genes that share expression patterns with FGD5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FGD5-AS1 Gene

Orthologs for FGD5-AS1 Gene

Evolution for FGD5-AS1 Gene

ENSEMBL:
Gene Tree for FGD5-AS1 (if available)
TreeFam:
Gene Tree for FGD5-AS1 (if available)

No data available for Orthologs for FGD5-AS1 Gene

Paralogs for FGD5-AS1 Gene

No data available for Paralogs for FGD5-AS1 Gene

Variants for FGD5-AS1 Gene

Sequence variations from dbSNP and Humsavar for FGD5-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000112613 -- 14,948,450(-) G/A/C upstream_transcript_variant
rs1000339762 -- 14,946,524(-) T/A intron_variant
rs1000863066 -- 14,943,082(-) A/G non_coding_transcript_variant
rs1000895669 -- 14,942,783(-) G/A non_coding_transcript_variant
rs1000956778 -- 14,943,550(-) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FGD5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759130 CNV gain 17122850
esv3595377 CNV gain 21293372
nsv1074573 CNV deletion 25765185
nsv834620 CNV gain 17160897

Additional Variant Information for FGD5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGD5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FGD5-AS1 Gene

Disorders for FGD5-AS1 Gene

Additional Disease Information for FGD5-AS1

No disorders were found for FGD5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FGD5-AS1 Gene

Publications for FGD5-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FGD5-AS1 Gene

Sources for FGD5-AS1 Gene

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