Aliases for FGD5-AS1 Gene

Data sources for FGD5-AS1 Gene:

Subcategory (RNA class) for FGD5-AS1 Gene

lncRNA

Aliases for FGD5-AS1 Gene

External Ids for FGD5-AS1 Gene

Previous GeneCards Identifiers for FGD5-AS1 Gene

  • GC03M014963
  • GC03M014965
  • GC03M015030
  • GC03M015424
  • GC03M015794

Summaries for FGD5-AS1 Gene

GeneCards Summary for FGD5-AS1 Gene

FGD5-AS1 (FGD5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FGD5-AS1 include Neuroblastoma.

Additional gene information for FGD5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FGD5-AS1 Gene

Genomics for FGD5-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FGD5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FGD5-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FGD5-AS1 Gene

Latest Assembly
chr3:14,877,561-14,949,563
(GRCh38/hg38)
Size:
72,003 bases
Orientation:
Minus strand

Previous Assembly
chr3:14,984,286-14,989,948
(GRCh37/hg19 by Entrez Gene)
Size:
5,663 bases
Orientation:
Minus strand

chr3:14,961,854-14,989,931
(GRCh37/hg19 by Ensembl)
Size:
28,078 bases
Orientation:
Minus strand

Genomic View for FGD5-AS1 Gene

Genes around FGD5-AS1 on UCSC Golden Path with GeneCards custom track
FGD5-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FGD5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGD5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGD5-AS1 Gene

Proteins for FGD5-AS1 Gene

Post-translational modifications for FGD5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGD5-AS1 Gene

Domains & Families for FGD5-AS1 Gene

Gene Families for FGD5-AS1 Gene

genes like me logo Genes that share domains with FGD5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FGD5-AS1 Gene

Function for FGD5-AS1 Gene

Phenotypes From GWAS Catalog for FGD5-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGD5-AS1 Gene

Localization for FGD5-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FGD5-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FGD5-AS1 Gene

Pathways & Interactions for FGD5-AS1 Gene

PathCards logo

SuperPathways for FGD5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FGD5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FGD5-AS1 Gene

Drugs & Compounds for FGD5-AS1 Gene

No Compound Related Data Available

Transcripts for FGD5-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FGD5-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A13D_9606 lncRNA 3774 3

RefSeq: NR_046253,

LNCipedia: FGD5-AS1:12,

NONCODE: NONHSAT088370.2,

URS000075C19F_9606 lncRNA 3531 3

RefSeq: NR_046255,

LNCipedia: FGD5-AS1:7,

NONCODE: NONHSAT088371.2,

URS0000210B87_9606 lncRNA 1184 3

Ensembl: ENST00000430166 (view in UCSC) ,

LNCipedia: FGD5-AS1:23, FGD5-AS1:3,

NONCODE: NONHSAT088364.2,

URS000075E0BE_9606 lncRNA 3805 2

RefSeq: NR_046251,

LNCipedia: FGD5-AS1:2,

URS0000759AEE_9606 lncRNA 3797 2

RefSeq: NR_046252,

LNCipedia: FGD5-AS1:14,

FGD5-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FGD5-AS1 Gene

13 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FGD5-AS1 Gene

No ASD Table

Relevant External Links for FGD5-AS1 Gene

GeneLoc Exon Structure for
FGD5-AS1

Expression for FGD5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FGD5-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FGD5-AS1

SOURCE GeneReport for Unigene cluster for FGD5-AS1 Gene:

Hs.517821
genes like me logo Genes that share expression patterns with FGD5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FGD5-AS1 Gene

Orthologs for FGD5-AS1 Gene

Evolution for FGD5-AS1 Gene

ENSEMBL:
Gene Tree for FGD5-AS1 (if available)
TreeFam:
Gene Tree for FGD5-AS1 (if available)

No data available for Orthologs for FGD5-AS1 Gene

Paralogs for FGD5-AS1 Gene

No data available for Paralogs for FGD5-AS1 Gene

Variants for FGD5-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FGD5-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for FGD5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759130 CNV gain 17122850
esv3595377 CNV gain 21293372
nsv1074573 CNV deletion 25765185
nsv834620 CNV gain 17160897

Additional Variant Information for FGD5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGD5-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FGD5-AS1 Gene

Disorders for FGD5-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FGD5-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
neuroblastoma
  • nb
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FGD5-AS1

genes like me logo Genes that share disorders with FGD5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FGD5-AS1 Gene

Publications for FGD5-AS1 Gene

  1. Long noncoding RNA FGD5-AS1 promotes colorectal cancer cell proliferation, migration, and invasion through upregulating CDCA7 via sponging miR-302e. (PMID: 31332696) Li D … Chen Z (In vitro cellular & developmental biology. Animal 2019) 2 3
  2. Abnormal expression of long noncoding RNA FGD5-AS1 affects the development of periodontitis through regulating miR-142-3p/SOCS6/NF-κB pathway. (PMID: 31144533) Chen H … Li Y (Artificial cells, nanomedicine, and biotechnology 2019) 2 3
  3. LncRNA FGD5-AS1 can be predicted as therapeutic target in oral cancer. (PMID: 31899825) Liu L … Huang L (Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology 2020) 3
  4. Elevation of FGD5-AS1 contributes to cell progression by improving cisplatin resistance against non-small cell lung cancer cells through regulating miR-140-5p/WEE1 axis. (PMID: 32534055) Fu J … Wang D (Gene 2020) 3
  5. FGD5-AS1 facilitates glioblastoma progression by activation of Wnt/β-catenin signaling via regulating miR-129-5p/HNRNPK axis. (PMID: 32585241) Wu L … Yan D (Life sciences 2020) 3

Products for FGD5-AS1 Gene

Sources for FGD5-AS1 Gene