Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FEZF1-AS1 Gene

Subcategory (RNA class) for FEZF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FEZF1-AS1 Gene

  • FEZF1 Antisense RNA 1 2 3 5
  • FEZF1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FEZF1-AS1 Gene

Previous GeneCards Identifiers for FEZF1-AS1 Gene

  • GC07P121946

Summaries for FEZF1-AS1 Gene

GeneCards Summary for FEZF1-AS1 Gene

FEZF1-AS1 (FEZF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FEZF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FEZF1-AS1 Gene

Genomics for FEZF1-AS1 Gene

GeneHancer (GH) Regulatory Elements for FEZF1-AS1 Gene

Promoters and enhancers for FEZF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I122142 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.3 -159.6 -159644 2.4 PKNOX1 ATF1 FOXA2 ARID4B SIN3A ZNF2 ZNF48 YY1 GLIS2 ZNF213 AASS FEZF1-AS1 PTPRZ1 RNU7-154P
GH07I122147 Enhancer 0.7 ENCODE dbSUPER 6.6 -154.8 -154781 2.6 ZSCAN4 POU5F1 BACH1 ETS1 FEZF1-AS1 AASS LOC100130618
GH07I122136 Enhancer 0.8 Ensembl ENCODE 5.3 -166.3 -166257 1.6 IRF2 ZNF398 ZNF366 POLR2A SCRT2 ZSCAN5C PRDM1 ZBTB20 ZNF18 FEZF1-AS1 AASS RNU7-154P
GH07I122145 Enhancer 0.5 ENCODE dbSUPER 6.8 -157.4 -157418 1.5 POU5F1 AASS FEZF1-AS1 LOC100130618
GH07I122148 Enhancer 0.4 ENCODE dbSUPER 6.5 -156.3 -156327 0.1 FEZF1-AS1 AASS LOC100130618
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FEZF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FEZF1-AS1 Gene

Genomic Locations for FEZF1-AS1 Gene
chr7:122,303,658-122,310,077
(GRCh38/hg38)
Size:
6,420 bases
Orientation:
Plus strand
chr7:121,943,712-121,950,131
(GRCh37/hg19)

Genomic View for FEZF1-AS1 Gene

Genes around FEZF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FEZF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FEZF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FEZF1-AS1 Gene

Proteins for FEZF1-AS1 Gene

Post-translational modifications for FEZF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FEZF1-AS1 Gene

Domains & Families for FEZF1-AS1 Gene

Gene Families for FEZF1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FEZF1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FEZF1-AS1 Gene

Function for FEZF1-AS1 Gene

Phenotypes From GWAS Catalog for FEZF1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FEZF1-AS1 Gene

Localization for FEZF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FEZF1-AS1 Gene

Pathways & Interactions for FEZF1-AS1 Gene

SuperPathways for FEZF1-AS1 Gene

No Data Available

Interacting Proteins for FEZF1-AS1 Gene

Gene Ontology (GO) - Biological Process for FEZF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FEZF1-AS1 Gene

Drugs & Compounds for FEZF1-AS1 Gene

No Compound Related Data Available

Transcripts for FEZF1-AS1 Gene

mRNA/cDNA for FEZF1-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FEZF1-AS1 Gene

FEZF1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FEZF1-AS1 Gene

No ASD Table

Relevant External Links for FEZF1-AS1 Gene

GeneLoc Exon Structure for
FEZF1-AS1
ECgene alternative splicing isoforms for
FEZF1-AS1

Expression for FEZF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FEZF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FEZF1-AS1 Gene

This gene is overexpressed in Brain - Hypothalamus (x14.3), Brain - Caudate (basal ganglia) (x8.5), Brain - Amygdala (x7.8), Brain - Putamen (basal ganglia) (x6.3), and Brain - Nucleus accumbens (basal ganglia) (x5.2).

SOURCE GeneReport for Unigene cluster for FEZF1-AS1 Gene:

Hs.664204
genes like me logo Genes that share expression patterns with FEZF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FEZF1-AS1 Gene

Orthologs for FEZF1-AS1 Gene

Evolution for FEZF1-AS1 Gene

ENSEMBL:
Gene Tree for FEZF1-AS1 (if available)
TreeFam:
Gene Tree for FEZF1-AS1 (if available)

No data available for Orthologs for FEZF1-AS1 Gene

Paralogs for FEZF1-AS1 Gene

No data available for Paralogs for FEZF1-AS1 Gene

Variants for FEZF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FEZF1-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs587777739 pathogenic, Hypogonadotropic hypogonadism 22 with anosmia 122,303,281(+) G/A upstream_transcript_variant
rs587777740 pathogenic, Hypogonadotropic hypogonadism 22 with anosmia 122,303,785(+) AAA/AA non_coding_transcript_variant
rs1000106128 -- 122,304,145(+) G/C non_coding_transcript_variant
rs1000193580 -- 122,307,152(+) C/A intron_variant
rs1001070986 -- 122,301,864(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FEZF1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3891198 CNV gain 25118596
nsv5931 CNV deletion 18451855

Additional Variant Information for FEZF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FEZF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FEZF1-AS1 Gene

Disorders for FEZF1-AS1 Gene

Additional Disease Information for FEZF1-AS1

No disorders were found for FEZF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FEZF1-AS1 Gene

Publications for FEZF1-AS1 Gene

  1. LincRNAFEZF1-AS1 represses p21 expression to promote gastric cancer proliferation through LSD1-Mediated H3K4me2 demethylation. (PMID: 28209170) Liu YW … Ji G (Molecular cancer 2017) 2 3 58
  2. Long non-coding RNA FEZF1-AS1 facilitates cell proliferation and migration in colorectal carcinoma. (PMID: 26848625) Chen N … Zhou J (Oncotarget 2016) 2 3 58
  3. LncRNA FEZF1-AS1 enhances epithelial-mesenchymal transition (EMT) through suppressing E-cadherin and regulating WNT pathway in non-small cell lung cancer (NSCLC). (PMID: 28858731) He R … Shen N (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for FEZF1-AS1 Gene

Sources for FEZF1-AS1 Gene

Content
Loading form....