Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FER1L6-AS1 Gene

Subcategory (RNA class) for FER1L6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FER1L6-AS1 Gene

  • FER1L6 Antisense RNA 1 2 3 4 5
  • FER1L6 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C8orf54 3 4
  • Chromosome 8 Open Reading Frame 54 2
  • FER1L6 Antisense Gene Protein 1 4

External Ids for FER1L6-AS1 Gene

Previous HGNC Symbols for FER1L6-AS1 Gene

  • C8orf54

Previous GeneCards Identifiers for FER1L6-AS1 Gene

  • GC08U901575
  • GC08M124997

Summaries for FER1L6-AS1 Gene

GeneCards Summary for FER1L6-AS1 Gene

FER1L6-AS1 (FER1L6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FER1L6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FER1L6-AS1 Gene

Genomics for FER1L6-AS1 Gene

GeneHancer (GH) Regulatory Elements for FER1L6-AS1 Gene

Promoters and enhancers for FER1L6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I124041 Enhancer 0.7 ENCODE 550.8 -0.8 -847 1.2 MEIS2 PKNOX1 ZBTB6 NFIB MZF1 ZIC2 CTBP1 ZNF213 ZNF366 POLR2A ENSG00000254249 FER1L6-AS1 TMEM65 GC08M123978 FER1L6
GH08I124040 Enhancer 0.5 Ensembl 550.8 +0.1 81 0.2 MITF MEIS2 PKNOX1 USF1 BHLHE40 MZF1 SPI1 ENSG00000254249 FER1L6-AS1 GC08M123978 FER1L6
GH08I124039 Enhancer 0.4 ENCODE 550.8 +0.8 837 0.1 RFX1 ZNF512B ENSG00000254249 FER1L6-AS1 GC08M123978 PIR31943 GC08P124010 GC08P124011 GC08P124012 GC08P124013 FER1L6
GH08I124194 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -157.6 -157567 8.7 HDGF PKNOX1 ARNT NEUROD1 SIN3A FEZF1 YBX1 ZNF2 ZBTB7B IRF4 TRMT12 FAM91A1 TMEM65 WASHC5 WASHC5-AS1 RNF139-AS1 ZNF572 RNF139 NSMCE2 FER1L6-AS2
GH08I124440 Enhancer 1.1 Ensembl ENCODE 11 -399.8 -399793 0.6 PKNOX1 SIN3A BRCA1 ETS1 ZNF143 RUNX3 REST SREBF1 RCOR2 KDM1A FAM91A1 FER1L6-AS1 ENSG00000254249 TRMT12 GC08P124425 GC08P124382
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FER1L6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FER1L6-AS1 Gene

Genomic Locations for FER1L6-AS1 Gene
chr8:123,984,138-124,040,782
(GRCh38/hg38)
Size:
56,645 bases
Orientation:
Minus strand
chr8:124,996,378-125,053,023
(GRCh37/hg19)

Genomic View for FER1L6-AS1 Gene

Genes around FER1L6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FER1L6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FER1L6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FER1L6-AS1 Gene

Proteins for FER1L6-AS1 Gene

  • Protein details for FER1L6-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NA97-FEAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein FER1L6-AS1
    Protein Accession:
    Q8NA97
    Secondary Accessions:
    • B2RPB9

    Protein attributes for FER1L6-AS1 Gene

    Size:
    138 amino acids
    Molecular mass:
    15156 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FER1L6-AS1 Gene

Post-translational modifications for FER1L6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FER1L6-AS1 Gene

Domains & Families for FER1L6-AS1 Gene

Protein Domains for FER1L6-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FER1L6-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FER1L6-AS1 Gene

Function for FER1L6-AS1 Gene

Phenotypes for FER1L6-AS1 Gene

genes like me logo Genes that share phenotypes with FER1L6-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FER1L6-AS1 Gene

Localization for FER1L6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FER1L6-AS1 Gene

Pathways & Interactions for FER1L6-AS1 Gene

SuperPathways for FER1L6-AS1 Gene

No Data Available

Interacting Proteins for FER1L6-AS1 Gene

Gene Ontology (GO) - Biological Process for FER1L6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FER1L6-AS1 Gene

Drugs & Compounds for FER1L6-AS1 Gene

No Compound Related Data Available

Transcripts for FER1L6-AS1 Gene

mRNA/cDNA for FER1L6-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FER1L6-AS1 Gene

FER1L6 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FER1L6-AS1 Gene

No ASD Table

Relevant External Links for FER1L6-AS1 Gene

GeneLoc Exon Structure for
FER1L6-AS1
ECgene alternative splicing isoforms for
FER1L6-AS1

Expression for FER1L6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FER1L6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FER1L6-AS1 Gene

This gene is overexpressed in Testis (x45.7).

Protein differential expression in normal tissues from HIPED for FER1L6-AS1 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FER1L6-AS1 Gene



Protein tissue co-expression partners for FER1L6-AS1 Gene

SOURCE GeneReport for Unigene cluster for FER1L6-AS1 Gene:

Hs.683919
genes like me logo Genes that share expression patterns with FER1L6-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FER1L6-AS1 Gene

Orthologs for FER1L6-AS1 Gene

Evolution for FER1L6-AS1 Gene

ENSEMBL:
Gene Tree for FER1L6-AS1 (if available)
TreeFam:
Gene Tree for FER1L6-AS1 (if available)

No data available for Orthologs for FER1L6-AS1 Gene

Paralogs for FER1L6-AS1 Gene

No data available for Paralogs for FER1L6-AS1 Gene

Variants for FER1L6-AS1 Gene

Sequence variations from dbSNP and Humsavar for FER1L6-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000036697 -- 124,001,687(-) G/C intron_variant
rs1000044054 -- 124,006,360(-) G/T intron_variant
rs1000062850 -- 124,017,879(-) T/C intron_variant
rs1000070603 -- 123,994,989(-) T/C intron_variant
rs1000090096 -- 124,002,009(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FER1L6-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv12305n54 CNV loss 21841781
dgv7308n100 CNV loss 25217958
esv3618675 CNV loss 21293372
nsv435876 CNV deletion 17901297

Additional Variant Information for FER1L6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FER1L6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FER1L6-AS1 Gene

Disorders for FER1L6-AS1 Gene

Additional Disease Information for FER1L6-AS1

No disorders were found for FER1L6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FER1L6-AS1 Gene

Publications for FER1L6-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FER1L6-AS1 Gene

Sources for FER1L6-AS1 Gene

Content
Loading form....