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FBXL19-AS1 Gene(RNA Gene)

FBXL19 Antisense RNA 1 (Head To Head)

GCID:
GC16M030932
GIFtS:
18
Genes Participants
UDN Logo

Aliases for FBXL19-AS1 Gene

Subcategory (RNA class) for FBXL19-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FBXL19-AS1 Gene

  • FBXL19 Antisense RNA 1 (Head To Head) 2 3 5
  • FBXL19 Antisense RNA 1 (Non-Protein Coding) 2 3
  • FBXL19 Antisense RNA 1 2 4
  • NCRNA00095 3 4
  • FBXL19 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 95 2

External Ids for FBXL19-AS1 Gene

ORGUL Members for FBXL19-AS1 Gene

Previous HGNC Symbols for FBXL19-AS1 Gene

  • NCRNA00095

Previous GeneCards Identifiers for FBXL19-AS1 Gene

  • GC16M030931

Summaries for FBXL19-AS1 Gene

GeneCards Summary for FBXL19-AS1 Gene

FBXL19-AS1 (FBXL19 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FBXL19-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FBXL19-AS1 Gene

Genomics for FBXL19-AS1 Gene

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  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for FBXL19-AS1 Gene

Promoters and enhancers for FBXL19-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I030921 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.1 -133 4.7 CLOCK ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 NFYC FBXL19 FBXL19-AS1 HSD3B7 SRCAP SMG1P5 GDPD3 ENSG00000260267 PRR14 INO80E ENSG00000235560
GH16I030927 Enhancer 0.8 ENCODE 0.8 -4.8 -4784 1.4 HDGF KLF17 ZNF76 DEAF1 ETS1 ZNF335 EGR1 ZNF143 RUNX3 CREM HSD3B7 FBXL19 FBXL19-AS1 PIR56097
GH16I030926 Enhancer 0.6 ENCODE 0.8 -3.2 -3201 0.9 ZKSCAN1 GLIS2 ZBTB48 ZNF341 PATZ1 ZNF24 ZNF600 PRDM10 HSD3B7 FBXL19 FBXL19-AS1 PIR56097
GH16I030939 Enhancer 1.1 Ensembl ENCODE 0.4 -18.3 -18267 3.6 HDGF PKNOX1 ARID4B ZNF2 ZNF48 YY1 GLIS2 ELK1 ZNF416 ZNF143 HSD3B7 ZNF668 KAT8 SETD1A ZNF646 BCL7C CTF1 MIR762 RNF40 CCDC189
GH16I030935 Enhancer 0.8 ENCODE 0.4 -12.1 -12056 0.2 HDAC1 HDGF PKNOX1 ARNT INSM2 ZNF2 RAD21 ZNF766 ZNF366 ZNF143 FBXL19 FBXL19-AS1 PIR56097
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FBXL19-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FBXL19-AS1 Gene

Genomic Locations for FBXL19-AS1 Gene
chr16:30,919,319-30,923,269
(GRCh38/hg38)
Size:
3,951 bases
Orientation:
Minus strand
chr16:30,930,640-30,934,590
(GRCh37/hg19)

Genomic View for FBXL19-AS1 Gene

Genes around FBXL19-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FBXL19-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FBXL19-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FBXL19-AS1 Gene

Proteins for FBXL19-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for FBXL19-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q494R0-FBAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein FBXL19-AS1
    Protein Accession:
    Q494R0
    Secondary Accessions:
    • Q3KR42
    • Q8NAQ9

    Protein attributes for FBXL19-AS1 Gene

    Size:
    122 amino acids
    Molecular mass:
    13218 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FBXL19-AS1 Gene

Post-translational modifications for FBXL19-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FBXL19-AS1 Gene

Domains & Families for FBXL19-AS1 Gene

Gene Families for FBXL19-AS1 Gene

HGNC:

Protein Domains for FBXL19-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FBXL19-AS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FBXL19-AS1 Gene

Function for FBXL19-AS1 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for FBXL19-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FBXL19-AS1 Gene

Localization for FBXL19-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FBXL19-AS1 Gene

Pathways & Interactions for FBXL19-AS1 Gene

SuperPathways for FBXL19-AS1 Gene

PathCards logo More details on SuperPathways for FBXL19-AS1
No Data Available

Interacting Proteins for FBXL19-AS1 Gene

Gene Ontology (GO) - Biological Process for FBXL19-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FBXL19-AS1 Gene

Drugs & Compounds for FBXL19-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FBXL19-AS1 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for FBXL19-AS1 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FBXL19-AS1 Gene

FBXL19 antisense RNA 1 (head to head):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FBXL19-AS1 Gene

No ASD Table

Relevant External Links for FBXL19-AS1 Gene

GeneLoc Exon Structure for
FBXL19-AS1
ECgene alternative splicing isoforms for
FBXL19-AS1

Expression for FBXL19-AS1 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FBXL19-AS1 Gene

mRNA expression in normal human tissues for FBXL19-AS1 Gene
mRNA expression by GTEx for FBXL19-AS1 Gene

SOURCE GeneReport for Unigene cluster for FBXL19-AS1 Gene:

Hs.711535
genes like me logo Genes that share expression patterns with FBXL19-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FBXL19-AS1 Gene

Orthologs for FBXL19-AS1 Gene

Evolution for FBXL19-AS1 Gene

ENSEMBL:
Gene Tree for FBXL19-AS1 (if available)
TreeFam:
Gene Tree for FBXL19-AS1 (if available)

No data available for Orthologs for FBXL19-AS1 Gene

Paralogs for FBXL19-AS1 Gene

No data available for Paralogs for FBXL19-AS1 Gene

Variants for FBXL19-AS1 Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for FBXL19-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000193023 -- 30,919,928(-) G/A non_coding_transcript_variant
rs1000603447 -- 30,921,682(-) A/G non_coding_transcript_variant
rs1001101368 -- 30,925,116(-) A/G upstream_transcript_variant
rs1002476439 -- 30,921,358(-) C/G/T non_coding_transcript_variant
rs1002837784 -- 30,921,159(-) A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FBXL19-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv35n68 CNV loss 17160897
nsv457483 CNV loss 19166990
nsv571820 CNV loss 21841781
nsv833189 CNV loss 17160897
nsv953802 CNV deletion 24416366

Additional Variant Information for FBXL19-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FBXL19-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FBXL19-AS1 Gene

Disorders for FBXL19-AS1 Gene

Additional Disease Information for FBXL19-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for FBXL19-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FBXL19-AS1 Gene

Publications for FBXL19-AS1 Gene

  1. Long non-coding RNA FBXL19-AS1 plays oncogenic role in colorectal cancer by sponging miR-203. (PMID: 28479250) Shen B … Feng J (Biochemical and biophysical research communications 2017) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Purification of CpG islands using a methylated DNA binding column. (PMID: 8012384) Cross SH … Bird AP (Nature genetics 1994) 3 58

Products for FBXL19-AS1 Gene

Sources for FBXL19-AS1 Gene

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