Aliases for FBXL19-AS1 Gene

Subcategory (RNA class) for FBXL19-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FBXL19-AS1 Gene

  • FBXL19 Antisense RNA 1 2 3 4 5
  • FBXL19-AS1 2 5 165
  • FBXL19 Antisense RNA 1 (Non-Protein Coding) 2 3
  • FBXL19 Antisense RNA 1 (Head To Head) 2 3
  • NCRNA00095 3 4
  • Putative Uncharacterized Protein FBXL19-AS1 4
  • FBXL19 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 95 2
  • NONHSAG019125.2 91
  • HSALNG0110794 164
  • MGC125469 2
  • MGC125470 2
  • MGC125472 2

External Ids for FBXL19-AS1 Gene

Previous HGNC Symbols for FBXL19-AS1 Gene

  • NCRNA00095

Previous GeneCards Identifiers for FBXL19-AS1 Gene

  • GC16M030931

Summaries for FBXL19-AS1 Gene

GeneCards Summary for FBXL19-AS1 Gene

FBXL19-AS1 (FBXL19 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FBXL19-AS1 include Rheumatoid Arthritis and Colorectal Cancer.

Additional gene information for FBXL19-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FBXL19-AS1 Gene

Genomics for FBXL19-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FBXL19-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J030921 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +2.7 2748 5.8 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 REST ZNF629 SIX5 SOX13 FBXL19 FBXL19-AS1 SRCAP HSD3B7 INO80E ZNF764 PRR14 SMG1P5 SETD1A GDPD3
GH16J030927 Promoter/Enhancer 1.1 Ensembl ENCODE 600.7 -1.3 -1304 1.4 PRDM10 SIX5 IKZF1 ZNF143 ZIC2 RBFOX2 PATZ1 NR2C1 ZNF740 POLR2A FBXL19-AS1 HSD3B7 FBXL19 piR-41306-103 ORAI3
GH16J030935 Enhancer 1 Ensembl ENCODE 0.4 -8.4 -8351 1.4 CTCF ZBTB33 ZNF629 IKZF1 JUND PRDM1 MTA2 PKNOX1 ZNF24 REST HSD3B7 SMG1P5 SRCAP SETD1A ENSG00000260267 KAT8 ENSG00000260304 ZNF747 NPIPB13 BCL7C
GH16J030937 Enhancer 0.7 Ensembl dbSUPER 0.4 -11.5 -11452 1.6 PRDM10 CEBPB SPI1 ATF3 ZBTB33 POLR2A HLF ZFP36 HSD3B7 STX1B STX4 PRSS36 KAT8 piR-41306-103 FBXL19-AS1 ORAI3 FBXL19
GH16J030916 Enhancer 0.6 FANTOM5 Ensembl 0.4 +10.3 10348 0.4 NR2C1 RBM22 NR2F1 NR2F6 piR-37749 FBXL19 FBXL19-AS1 CTF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FBXL19-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FBXL19-AS1 Gene

Genomic Locations for FBXL19-AS1 Gene
chr16:30,915,910-30,926,749
(GRCh38/hg38)
Size:
10,840 bases
Orientation:
Minus strand
chr16:30,930,640-30,934,590
(GRCh37/hg19)
Size:
3,951 bases
Orientation:
Minus strand

Genomic View for FBXL19-AS1 Gene

Genes around FBXL19-AS1 on UCSC Golden Path with GeneCards custom track
FBXL19-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FBXL19-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FBXL19-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FBXL19-AS1 Gene

Proteins for FBXL19-AS1 Gene

  • Protein details for FBXL19-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q494R0-FBAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein FBXL19-AS1
    Protein Accession:
    Q494R0
    Secondary Accessions:
    • Q3KR42
    • Q8NAQ9

    Protein attributes for FBXL19-AS1 Gene

    Size:
    122 amino acids
    Molecular mass:
    13218 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FBXL19-AS1 Gene

Post-translational modifications for FBXL19-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FBXL19-AS1 Gene

Domains & Families for FBXL19-AS1 Gene

Gene Families for FBXL19-AS1 Gene

Protein Domains for FBXL19-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with FBXL19-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FBXL19-AS1 Gene

Function for FBXL19-AS1 Gene

Phenotypes From GWAS Catalog for FBXL19-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FBXL19-AS1 Gene

Localization for FBXL19-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FBXL19-AS1 Gene

Pathways & Interactions for FBXL19-AS1 Gene

PathCards logo

SuperPathways for FBXL19-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FBXL19-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FBXL19-AS1 Gene

Drugs & Compounds for FBXL19-AS1 Gene

No Compound Related Data Available

Transcripts for FBXL19-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FBXL19-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002206F5_9606 lncRNA 3951 6

HGNC: 27557,

RefSeq: NR_024348,

Ensembl: ENST00000563777 (view in UCSC) ,

LncBook: HSALNT0229812,

LNCipedia: FBXL19-AS1:2,

NONCODE: NONHSAT141827.2,

URS0000D5C8FD_9606 lncRNA 7385 1

LNCipedia: FBXL19-AS1:1,

URS0000D5770D_9606 lncRNA 7357 1

LNCipedia: FBXL19-AS1:3,

URS0000E9874E_9606 lncRNA 3952 1

LncBook: HSALNT0289473,

URS0000D58C5F_9606 lncRNA 3948 1

LNCipedia: FBXL19-AS1:4,

FBXL19-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FBXL19-AS1 Gene

1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FBXL19-AS1 Gene

No ASD Table

Relevant External Links for FBXL19-AS1 Gene

GeneLoc Exon Structure for
FBXL19-AS1

Expression for FBXL19-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FBXL19-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FBXL19-AS1

SOURCE GeneReport for Unigene cluster for FBXL19-AS1 Gene:

Hs.711535
genes like me logo Genes that share expression patterns with FBXL19-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FBXL19-AS1 Gene

Orthologs for FBXL19-AS1 Gene

Evolution for FBXL19-AS1 Gene

ENSEMBL:
Gene Tree for FBXL19-AS1 (if available)
TreeFam:
Gene Tree for FBXL19-AS1 (if available)

No data available for Orthologs for FBXL19-AS1 Gene

Paralogs for FBXL19-AS1 Gene

No data available for Paralogs for FBXL19-AS1 Gene

Variants for FBXL19-AS1 Gene

Additional dbSNP identifiers (rs#s) for FBXL19-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for FBXL19-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv35n68 CNV loss 17160897
nsv457483 CNV loss 19166990
nsv571820 CNV loss 21841781
nsv833189 CNV loss 17160897
nsv953802 CNV deletion 24416366

Additional Variant Information for FBXL19-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FBXL19-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FBXL19-AS1 Gene

Disorders for FBXL19-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for FBXL19-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
rheumatoid arthritis
  • ra
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with FBXL19-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FBXL19-AS1 Gene

Publications for FBXL19-AS1 Gene

  1. LncRNA FBXL19-AS1 promotes proliferation and metastasis via regulating epithelial-mesenchymal transition in non-small cell lung cancer. (PMID: 31210311) Yu DJ … Zhong M (European review for medical and pharmacological sciences 2019) 2 3
  2. Long non-coding RNA FBXL19-AS1 plays oncogenic role in colorectal cancer by sponging miR-203. (PMID: 28479250) Shen B … Feng J (Biochemical and biophysical research communications 2017) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  4. LIN28A-stabilized FBXL19-AS1 promotes breast cancer migration, invasion and EMT by regulating WDR66. (PMID: 31140103) Zhang Y … Zhou D (In vitro cellular & developmental biology. Animal 2019) 3
  5. FBXL19-AS1 exerts oncogenic function by sponging miR-431-5p to regulate RAF1 expression in lung cancer. (PMID: 30610161) Jiang Q … Zhao Y (Bioscience reports 2019) 3

Products for FBXL19-AS1 Gene

Sources for FBXL19-AS1 Gene