Aliases for FARSA-AS1 Gene

Subcategory (RNA class) for FARSA-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for FARSA-AS1 Gene

  • FARSA Antisense RNA 1 2 3 5
  • FARSA-AS1 2 5
  • NONHSAG024911.2 91
  • HSALNG0124189 164

External Ids for FARSA-AS1 Gene

Summaries for FARSA-AS1 Gene

GeneCards Summary for FARSA-AS1 Gene

FARSA-AS1 (FARSA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FARSA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FARSA-AS1 Gene

Genomics for FARSA-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FARSA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J012931 Enhancer 0.3 dbSUPER 600.7 +1.3 1319 0.6 ATF4 POLR2A FARSA-AS1 FARSA SYCE2
GH19J012932 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +2.9 2892 2.4 SP1 CREB1 GATAD2A ZNF629 TFE3 SIX5 LEF1 NFKBIZ POLR2A BACH1 FARSA GCDH DNASE2 FARSA-AS1 SYCE2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FARSA-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FARSA-AS1 Gene

Genomic Locations for FARSA-AS1 Gene
chr19:12,930,522-12,933,296
(GRCh38/hg38)
Size:
2,775 bases
Orientation:
Plus strand
chr19:13,041,336-13,044,110
(GRCh37/hg19)
Size:
2,775 bases
Orientation:
Plus strand

Genomic View for FARSA-AS1 Gene

Genes around FARSA-AS1 on UCSC Golden Path with GeneCards custom track
FARSA-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FARSA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FARSA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FARSA-AS1 Gene

Proteins for FARSA-AS1 Gene

Post-translational modifications for FARSA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FARSA-AS1 Gene

Domains & Families for FARSA-AS1 Gene

Gene Families for FARSA-AS1 Gene

genes like me logo Genes that share domains with FARSA-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FARSA-AS1 Gene

Function for FARSA-AS1 Gene

Phenotypes From GWAS Catalog for FARSA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FARSA-AS1 Gene

Localization for FARSA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FARSA-AS1 Gene

Pathways & Interactions for FARSA-AS1 Gene

PathCards logo

SuperPathways for FARSA-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FARSA-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FARSA-AS1 Gene

Drugs & Compounds for FARSA-AS1 Gene

No Compound Related Data Available

Transcripts for FARSA-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FARSA-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000053A37E_9606 lncRNA 241 5

HGNC: 50479,

RefSeq: NR_149078,

Ensembl: ENST00000592636 (view in UCSC) ,

LncBook: HSALNT0256043,

NONCODE: NONHSAT061315.2,

FARSA-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FARSA-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FARSA-AS1 Gene

No ASD Table

Relevant External Links for FARSA-AS1 Gene

GeneLoc Exon Structure for
FARSA-AS1

Expression for FARSA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FARSA-AS1 Gene

genes like me logo Genes that share expression patterns with FARSA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FARSA-AS1 Gene

Orthologs for FARSA-AS1 Gene

Evolution for FARSA-AS1 Gene

ENSEMBL:
Gene Tree for FARSA-AS1 (if available)
TreeFam:
Gene Tree for FARSA-AS1 (if available)

No data available for Orthologs for FARSA-AS1 Gene

Paralogs for FARSA-AS1 Gene

No data available for Paralogs for FARSA-AS1 Gene

Variants for FARSA-AS1 Gene

Additional dbSNP identifiers (rs#s) for FARSA-AS1 Gene

Additional Variant Information for FARSA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FARSA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FARSA-AS1 Gene

Disorders for FARSA-AS1 Gene

Additional Disease Information for FARSA-AS1

No disorders were found for FARSA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FARSA-AS1 Gene

Publications for FARSA-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

No data available for Mastermind for FARSA-AS1 Gene

Products for FARSA-AS1 Gene

Sources for FARSA-AS1 Gene