Aliases for FAR2P2 Gene

Aliases for FAR2P2 Gene

  • Fatty Acyl-CoA Reductase 2 Pseudogene 2 2 3 5
  • FAR2P2 5

External Ids for FAR2P2 Gene

Previous GeneCards Identifiers for FAR2P2 Gene

  • GC02M131177

Summaries for FAR2P2 Gene

GeneCards Summary for FAR2P2 Gene

FAR2P2 (Fatty Acyl-CoA Reductase 2 Pseudogene 2) is a Pseudogene.

Additional gene information for FAR2P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAR2P2 Gene

Genomics for FAR2P2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAR2P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J130389 Promoter/Enhancer 1.8 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 7.4 +40.2 40180 2.8 ZNF600 CEBPA ZIC2 YY1 MXD4 SMAD5 KLF11 ZNF341 KMT2B SP2 HSALNG0018813 PTPN18 FAR2P2 AMER3 CCDC115 LOC105373618 POTEI
GH02J130386 Enhancer 0.8 Ensembl dbSUPER 7.6 +44.8 44762 4 NFIC IRF4 EBF1 EGR1 IKZF1 ATF4 MTA3 ATF2 TBL1XR1 ATF3 HSALNG0018812 LOC105373618 PTPN18 FAR2P2 HSALNG0018813 POTEI
GH02J130428 Promoter 1.1 Ensembl CraniofacialAtlas 4.9 +3.2 3162 2 REST ELF1 CTCF SMARCA4 NRF1 FOXP1 GMEB1 GTF2F1 RNF2 CTBP1 KLF2P2 lnc-PTPN18-3 PTPN18 CYP4F62P FAR2P2 lnc-POTEI-2 POTEI
GH02J129604 Enhancer 0.4 Ensembl 4.6 +825.6 825562 3.2 CTCF NFIB EP300 FAR2P2 lnc-RAB6C-2 piR-35708 RAB6C
GH02J129959 Enhancer 0.3 ENCODE 4.8 +472.5 472450 0.1 FOXA1 ZNF512 RF00017-2988 FAR2P2 HSALNG0018757 RAB6C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAR2P2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAR2P2 Gene

Latest Assembly
chr2:130,416,750-130,431,363
(GRCh38/hg38)
Size:
14,614 bases
Orientation:
Minus strand

Previous Assembly
chr2:131,174,323-131,186,119
(GRCh37/hg19 by Entrez Gene)
Size:
11,797 bases
Orientation:
Minus strand

chr2:131,174,328-131,188,936
(GRCh37/hg19 by Ensembl)
Size:
14,609 bases
Orientation:
Minus strand

Genomic View for FAR2P2 Gene

Genes around FAR2P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAR2P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAR2P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAR2P2 Gene

Proteins for FAR2P2 Gene

Post-translational modifications for FAR2P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAR2P2 Gene

Domains & Families for FAR2P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAR2P2 Gene

Function for FAR2P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAR2P2 Gene

Localization for FAR2P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAR2P2 Gene

Pathways & Interactions for FAR2P2 Gene

PathCards logo

SuperPathways for FAR2P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAR2P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAR2P2 Gene

Drugs & Compounds for FAR2P2 Gene

No Compound Related Data Available

Transcripts for FAR2P2 Gene

mRNA/cDNA for FAR2P2 Gene

9 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAR2P2 Gene

No ASD Table

Relevant External Links for FAR2P2 Gene

GeneLoc Exon Structure for
FAR2P2

Expression for FAR2P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAR2P2 Gene

mRNA differential expression in normal tissues according to GTEx for FAR2P2 Gene

This gene is overexpressed in Brain - Hypothalamus (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAR2P2

genes like me logo Genes that share expression patterns with FAR2P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAR2P2 Gene

Orthologs for FAR2P2 Gene

Evolution for FAR2P2 Gene

ENSEMBL:
Gene Tree for FAR2P2 (if available)
TreeFam:
Gene Tree for FAR2P2 (if available)
Alliance of Genome Resources:
Additional Orthologs for FAR2P2

No data available for Orthologs for FAR2P2 Gene

Paralogs for FAR2P2 Gene

No data available for Paralogs for FAR2P2 Gene

Variants for FAR2P2 Gene

Structural Variations from Database of Genomic Variants (DGV) for FAR2P2 Gene

Variant ID Type Subtype PubMed ID
dgv2032n106 OTHER inversion 24896259
dgv7083n54 CNV loss 21841781
esv27361 CNV loss 19812545
esv2759092 CNV gain+loss 17122850
esv3893326 CNV gain 25118596
nsv1005664 CNV loss 25217958
nsv10169 CNV loss 18304495
nsv1146033 CNV duplication 26484159
nsv1147463 OTHER inversion 26484159
nsv428403 CNV loss 18775914
nsv7327 OTHER inversion 18451855
nsv963720 CNV duplication 23825009
nsv963844 CNV duplication 23825009
nsv979260 CNV duplication 23825009
nsv998333 CNV gain+loss 25217958

Additional Variant Information for FAR2P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAR2P2
Leiden Open Variation Database (LOVD)
FAR2P2

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for FAR2P2 Gene

Disorders for FAR2P2 Gene

Additional Disease Information for FAR2P2

No disorders were found for FAR2P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAR2P2 Gene

Publications for FAR2P2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for FAR2P2 Gene

Sources for FAR2P2 Gene