Aliases for FAR2P1 Gene

Aliases for FAR2P1 Gene

  • Fatty Acyl-CoA Reductase 2 Pseudogene 1 2 3 5
  • Epididymis Luminal Protein 182 3
  • LOC440905 2
  • HEL-182 3
  • FAR2P1 5

External Ids for FAR2P1 Gene

Previous GeneCards Identifiers for FAR2P1 Gene

  • GC02M130767
  • GC02M129990

Summaries for FAR2P1 Gene

GeneCards Summary for FAR2P1 Gene

FAR2P1 (Fatty Acyl-CoA Reductase 2 Pseudogene 1) is a Pseudogene. Diseases associated with FAR2P1 include Lung Cancer Susceptibility 3 and Lung Cancer. Gene Ontology (GO) annotations related to this gene include fatty-acyl-CoA reductase (alcohol-forming) activity.

Additional gene information for FAR2P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAR2P1 Gene

Genomics for FAR2P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAR2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J130354 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 4.3 -304.6 -304570 3.4 ZNF207 MYC ZNF592 POLR2A YY1 MXD4 NONO CTCF REST SMAD5 PTPN18 lnc-CCDC115-3 FAR2P1 HSALNG0018804 CCDC115
GH02J130376 Enhancer 0.9 ENCODE dbSUPER 4.4 -326.0 -325995 1.4 SP1 TRIM22 IRF4 EBF1 CBFB SMARCA5 BHLHE40 CTCF IKZF1 BMI1 HSALNG0018811 piR-31047 PTPN18 FAR2P1 piR-55690 POTEI
GH02J130529 Enhancer 0.3 Ensembl dbSUPER 4.5 -478.9 -478870 0.8 ENSG00000225341 FAR2P1 ENSG00000225819 CFC1B CFC1
GH02J130036 Promoter 0.6 Ensembl 0.4 +14.1 14130 1.2 SIN3A CTCF ZNF687 KLF2P1 lnc-RAB6C-7 RAB6C-AS1 piR-36816-001 FAR2P1 ENSG00000286058 ENSG00000286026 RAB6C POTEF
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAR2P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAR2P1 Gene

Latest Assembly
chr2:130,012,065-130,051,131
(GRCh38/hg38)
Size:
39,067 bases
Orientation:
Minus strand

Previous Assembly
chr2:130,783,571-130,808,704
(GRCh37/hg19 by Entrez Gene)
Size:
25,134 bases
Orientation:
Minus strand

chr2:130,748,029-130,808,704
(GRCh37/hg19 by Ensembl)
Size:
60,676 bases
Orientation:
Minus strand

Genomic View for FAR2P1 Gene

Genes around FAR2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAR2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAR2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAR2P1 Gene

Proteins for FAR2P1 Gene

Post-translational modifications for FAR2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAR2P1 Gene

Domains & Families for FAR2P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAR2P1 Gene

Function for FAR2P1 Gene

Animal Models for research

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAR2P1 Gene

Localization for FAR2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAR2P1 Gene

Pathways & Interactions for FAR2P1 Gene

PathCards logo

SuperPathways for FAR2P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAR2P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAR2P1 Gene

Drugs & Compounds for FAR2P1 Gene

No Compound Related Data Available

Transcripts for FAR2P1 Gene

mRNA/cDNA for FAR2P1 Gene

1 REFSEQ mRNAs :
9 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for FAR2P1

Alternative Splicing Database (ASD) splice patterns (SP) for FAR2P1 Gene

No ASD Table

Relevant External Links for FAR2P1 Gene

GeneLoc Exon Structure for
FAR2P1

Expression for FAR2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAR2P1 Gene

mRNA differential expression in normal tissues according to GTEx for FAR2P1 Gene

This gene is overexpressed in Testis (x34.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAR2P1

genes like me logo Genes that share expression patterns with FAR2P1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAR2P1 Gene

Orthologs for FAR2P1 Gene

Evolution for FAR2P1 Gene

ENSEMBL:
Gene Tree for FAR2P1 (if available)
TreeFam:
Gene Tree for FAR2P1 (if available)
Alliance of Genome Resources:
Additional Orthologs for FAR2P1

No data available for Orthologs for FAR2P1 Gene

Paralogs for FAR2P1 Gene

No data available for Paralogs for FAR2P1 Gene

Variants for FAR2P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for FAR2P1 Gene

Variant ID Type Subtype PubMed ID
dgv1169e212 CNV loss 25503493
dgv2032n106 OTHER inversion 24896259
dgv4071n100 CNV loss 25217958
dgv4072n100 CNV loss 25217958
esv25418 CNV loss 19812545
esv2674382 CNV deletion 23128226
esv2751826 CNV gain 17911159
esv2759092 CNV gain+loss 17122850
esv2760631 CNV gain+loss 21179565
esv2763387 CNV loss 21179565
esv3584065 CNV loss 25503493
esv3592435 CNV loss 21293372
esv3592437 CNV loss 21293372
nsv1003941 CNV gain 25217958
nsv1008911 CNV gain 25217958
nsv1011360 CNV loss 25217958
nsv10158 CNV loss 18304495
nsv10159 CNV loss 18304495
nsv1141361 CNV duplication 24896259
nsv1160865 OTHER complex 26073780
nsv428403 CNV loss 18775914
nsv442833 CNV loss 18776908
nsv459274 CNV loss 19166990
nsv517144 CNV loss 19592680
nsv583046 CNV loss 21841781
nsv821629 CNV loss 15273396
nsv834374 CNV gain 17160897
nsv961880 CNV duplication 23825009
nsv961881 CNV duplication 23825009
nsv962002 CNV duplication 23825009

Additional Variant Information for FAR2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAR2P1
Leiden Open Variation Database (LOVD)
FAR2P1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for FAR2P1 Gene

Disorders for FAR2P1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for FAR2P1 Gene - From: LNC

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
lung cancer
  • lung cancer, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FAR2P1

genes like me logo Genes that share disorders with FAR2P1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAR2P1 Gene

Publications for FAR2P1 Gene

  1. LncRNA expression profiles of EGFR exon 19 deletions in lung adenocarcinoma ascertained by using microarray analysis. (PMID: 25085781) Wang Y … Pan J (Medical oncology (Northwood, London, England) 2014) 2 3 72
  2. Detection of long-chain non-encoding RNA differential expression in non-small cell lung cancer by microarray analysis and preliminary verification. (PMID: 25394782) Wang Y … Chen J (Molecular medicine reports 2015) 72
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for FAR2P1 Gene

Sources for FAR2P1 Gene