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Aliases for FAR2P1 Gene

Aliases for FAR2P1 Gene

  • Fatty Acyl-CoA Reductase 2 Pseudogene 1 2 3 5
  • Fatty Acyl-CoA Reductase 2-Like 3
  • Epididymis Luminal Protein 182 3
  • HEL-182 3

External Ids for FAR2P1 Gene

Previous GeneCards Identifiers for FAR2P1 Gene

  • GC02M130767

Summaries for FAR2P1 Gene

GeneCards Summary for FAR2P1 Gene

FAR2P1 (Fatty Acyl-CoA Reductase 2 Pseudogene 1) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include fatty-acyl-CoA reductase (alcohol-forming) activity.

Additional gene information for FAR2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAR2P1 Gene

Genomics for FAR2P1 Gene

GeneHancer (GH) Regulatory Elements for FAR2P1 Gene

Promoters and enhancers for FAR2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I130354 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 4.3 -304.8 -304831 2.1 HDGF PKNOX1 SMAD1 ATF1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 PTPN18 FAR2P1 PIR60541
GH02I130376 Enhancer 0.9 ENCODE dbSUPER 4.4 -326.0 -325995 1.4 CTCF PKNOX1 EBF1 BMI1 IRF4 RAD21 RELA POLR2A ATF7 IKZF2 PIR32046 PTPN18 FAR2P1 PIR49689
GH02I130526 Enhancer 0.2 dbSUPER 4.5 -477.1 -477149 4.5 ENSG00000225341 ENSG00000225819 PTPN18 FAR2P1 CFC1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAR2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAR2P1 Gene

Genomic Locations for FAR2P1 Gene
chr2:129,990,456-130,051,131
(GRCh38/hg38)
Size:
60,676 bases
Orientation:
Minus strand
chr2:130,748,029-130,808,704
(GRCh37/hg19)

Genomic View for FAR2P1 Gene

Genes around FAR2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAR2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAR2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAR2P1 Gene

Proteins for FAR2P1 Gene

Post-translational modifications for FAR2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAR2P1 Gene

Domains & Families for FAR2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAR2P1 Gene

Function for FAR2P1 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAR2P1 Gene

Localization for FAR2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAR2P1 Gene

Pathways & Interactions for FAR2P1 Gene

SuperPathways for FAR2P1 Gene

No Data Available

Interacting Proteins for FAR2P1 Gene

Gene Ontology (GO) - Biological Process for FAR2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAR2P1 Gene

Drugs & Compounds for FAR2P1 Gene

No Compound Related Data Available

Transcripts for FAR2P1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for FAR2P1 Gene

No ASD Table

Relevant External Links for FAR2P1 Gene

GeneLoc Exon Structure for
FAR2P1
ECgene alternative splicing isoforms for
FAR2P1

Expression for FAR2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAR2P1 Gene

mRNA differential expression in normal tissues according to GTEx for FAR2P1 Gene

This gene is overexpressed in Testis (x34.0).

NURSA nuclear receptor signaling pathways regulating expression of FAR2P1 Gene:

FAR2P1
genes like me logo Genes that share expression patterns with FAR2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAR2P1 Gene

Orthologs for FAR2P1 Gene

Evolution for FAR2P1 Gene

ENSEMBL:
Gene Tree for FAR2P1 (if available)
TreeFam:
Gene Tree for FAR2P1 (if available)

No data available for Orthologs for FAR2P1 Gene

Paralogs for FAR2P1 Gene

No data available for Paralogs for FAR2P1 Gene

Variants for FAR2P1 Gene

Sequence variations from dbSNP and Humsavar for FAR2P1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000337129 -- 130,042,625(-) G/C intron_variant
rs1000338213 -- 130,048,528(-) G/T non_coding_transcript_variant
rs1000521873 -- 130,037,563(-) T/G intron_variant
rs1000588681 -- 130,036,595(-) A/G intron_variant
rs1000617662 -- 130,043,993(-) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAR2P1 Gene

Variant ID Type Subtype PubMed ID
nsv962002 CNV duplication 23825009
nsv961881 CNV duplication 23825009
nsv961880 CNV duplication 23825009
nsv834374 CNV gain 17160897
nsv821629 CNV loss 15273396
nsv583046 CNV loss 21841781
nsv517144 CNV loss 19592680
nsv459274 CNV loss 19166990
nsv442833 CNV loss 18776908
nsv428403 CNV loss 18775914
nsv1160865 OTHER complex 26073780
nsv1141361 CNV duplication 24896259
nsv10159 CNV loss 18304495
nsv10158 CNV loss 18304495
nsv1011360 CNV loss 25217958
nsv1008911 CNV gain 25217958
nsv1003941 CNV gain 25217958
esv3592437 CNV loss 21293372
esv3592435 CNV loss 21293372
esv3584065 CNV loss 25503493
esv2763387 CNV loss 21179565
esv2760631 CNV gain+loss 21179565
esv2759092 CNV gain+loss 17122850
esv2751826 CNV gain 17911159
esv2674382 CNV deletion 23128226
esv25418 CNV loss 19812545
dgv4072n100 CNV loss 25217958
dgv4071n100 CNV loss 25217958
dgv2032n106 OTHER inversion 24896259
dgv1169e212 CNV loss 25503493

Additional Variant Information for FAR2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAR2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAR2P1 Gene

Disorders for FAR2P1 Gene

Additional Disease Information for FAR2P1

No disorders were found for FAR2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAR2P1 Gene

Publications for FAR2P1 Gene

  1. LncRNA expression profiles of EGFR exon 19 deletions in lung adenocarcinoma ascertained by using microarray analysis. (PMID: 25085781) Wang Y … Pan J (Medical oncology (Northwood, London, England) 2014) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FAR2P1 Gene

Sources for FAR2P1 Gene

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