FAR1-IT1 Gene (RNA Gene)

FAR1 Intronic Transcript 1

GC11P013669
GIFtS:
10
See more...

Aliases for FAR1-IT1 Gene

Subcategory (RNA class) for FAR1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FAR1-IT1 Gene

  • FAR1 Intronic Transcript 1 2 3 5
  • FAR1-IT1 2 5 165
  • FAR1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG007708.2 91
  • HSALNG0082776 164

External Ids for FAR1-IT1 Gene

Previous GeneCards Identifiers for FAR1-IT1 Gene

  • GC00U933579
  • GC11P013691

Summaries for FAR1-IT1 Gene

GeneCards Summary for FAR1-IT1 Gene

FAR1-IT1 (FAR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAR1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAR1-IT1 Gene

Genomics for FAR1-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for FAR1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J013667 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 0.0 -15 4 CEBPG SP1 CREB1 PRDM10 CTCF ZNF692 BACH1 FOS LARP7 PRDM1 FAR1 FAR1-IT1 lnc-ARNTL-4 SPON1
GH11J013697 Enhancer 1.1 Ensembl ENCODE dbSUPER 12 +28.8 28845 0.7 MTA2 ZNF24 DPF2 SOX6 GATAD2B TCF12 EP300 HMBOX1 PHB2 ZBTB11 FAR1 FAR1-IT1 ENSG00000200685 piR-50852-026 SPON1
GH11J013698 Enhancer 0.8 Ensembl dbSUPER 12 +29.4 29374 0.2 EP300 LEF1 ZBTB11 AFF1 BCOR NR2F1 ZNF384 TAL1 ADNP HLTF FAR1-IT1 FAR1 ENSG00000200685 piR-50852-026 SPON1
GH11J013717 Enhancer 0.8 Ensembl ENCODE dbSUPER 11.4 +48.2 48174 1.4 JUND FOSL1 ZBTB40 ATF3 JUN FOS FAR1 FAR1-IT1 ENSG00000200685 piR-50852-026 SPON1
GH11J013704 Enhancer 0.4 Ensembl dbSUPER 11.6 +36.2 36174 1 ZNF585B FAR1 FAR1-IT1 ENSG00000200685 piR-50852-026 SPON1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAR1-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAR1-IT1 Gene

Genomic Locations for FAR1-IT1 Gene
chr11:13,669,327-13,670,150
(GRCh38/hg38)
Size:
824 bases
Orientation:
Plus strand
chr11:13,690,874-13,691,696
(GRCh37/hg19)
Size:
823 bases
Orientation:
Plus strand

Genomic View for FAR1-IT1 Gene

Genes around FAR1-IT1 on UCSC Golden Path with GeneCards custom track
FAR1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FAR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for FAR1-IT1 Gene

Proteins for FAR1-IT1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FAR1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAR1-IT1 Gene

Domains & Families for FAR1-IT1 Gene

Gene Families for FAR1-IT1 Gene

HGNC:
genes like me logo Genes that share domains with FAR1-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAR1-IT1 Gene

Function for FAR1-IT1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAR1-IT1 Gene

Localization for FAR1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAR1-IT1 Gene

Pathways & Interactions for FAR1-IT1 Gene

PathCards logo

SuperPathways for FAR1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAR1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAR1-IT1 Gene

Drugs & Compounds for FAR1-IT1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAR1-IT1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAR1-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001DC634_9606 lncRNA 368 5

HGNC: 41485,

Ensembl: ENST00000525233 (view in UCSC) ,

LncBook: HSALNT0172319,

LNCipedia: FAR1-IT1:1,

NONCODE: NONHSAT018111.2,

URS00009B0FEB_9606 lncRNA 368 2

LncBook: HSALNT0172320,

NONCODE: NONHSAT158857.1,

FAR1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAR1-IT1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAR1-IT1 Gene

No ASD Table

Relevant External Links for FAR1-IT1 Gene

GeneLoc Exon Structure for
FAR1-IT1

Expression for FAR1-IT1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAR1-IT1 Gene

mRNA expression in normal human tissues for FAR1-IT1 Gene
mRNA expression by GTEx for FAR1-IT1 Gene
genes like me logo Genes that share expression patterns with FAR1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAR1-IT1 Gene

Orthologs for FAR1-IT1 Gene

Evolution for FAR1-IT1 Gene

ENSEMBL:
Gene Tree for FAR1-IT1 (if available)
TreeFam:
Gene Tree for FAR1-IT1 (if available)

No data available for Orthologs for FAR1-IT1 Gene

Paralogs for FAR1-IT1 Gene

No data available for Paralogs for FAR1-IT1 Gene

Variants for FAR1-IT1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional Variant Information for FAR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAR1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAR1-IT1 Gene

Disorders for FAR1-IT1 Gene

Additional Disease Information for FAR1-IT1

Open Targets Platform

No disorders were found for FAR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAR1-IT1 Gene

Publications for FAR1-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

No data available for Mastermind for FAR1-IT1 Gene

Products for FAR1-IT1 Gene

Sources for FAR1-IT1 Gene