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Aliases for FANK1-AS1 Gene

Subcategory (RNA class) for FANK1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FANK1-AS1 Gene

  • FANK1 Antisense RNA 1 2 3 5
  • FANK1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FANK1-AS1 Gene

Previous GeneCards Identifiers for FANK1-AS1 Gene

  • GC10M127661

Summaries for FANK1-AS1 Gene

GeneCards Summary for FANK1-AS1 Gene

FANK1-AS1 (FANK1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FANK1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FANK1-AS1 Gene

Genomics for FANK1-AS1 Gene

GeneHancer (GH) Regulatory Elements for FANK1-AS1 Gene

Promoters and enhancers for FANK1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I125972 Enhancer 1.1 Ensembl ENCODE 550.8 -0.2 -202 1.2 ATF1 BRCA1 ATF7 FOS SP3 TSHZ1 ZNF518A STAT3 SP7 ZBTB21 FANK1-AS1 EDRF1 EDRF1-AS1 UROS FANK1 ENSG00000234134 GC10M126013
GH10I125982 Enhancer 0.8 Ensembl ENCODE 0.4 -9.8 -9771 1.7 CTCF ZNF654 ZNF792 TRIM22 SIN3A REST EBF1 ZIC2 RAD21 ZNF143 UROS FANK1 FANK1-AS1 GC10M126013
GH10I126012 Enhancer 1 Ensembl ENCODE 0.3 -41.3 -41330 3.7 HDAC1 FOXA2 INSM2 BATF RAD21 ZNF335 TCF12 EGR1 SCRT2 FOS GC10M126013 EDRF1 UROS FANK1 FANK1-AS1 ADAM12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FANK1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FANK1-AS1 Gene

Genomic Locations for FANK1-AS1 Gene
chr10:125,972,188-125,973,273
(GRCh38/hg38)
Size:
1,086 bases
Orientation:
Minus strand
chr10:127,660,757-127,661,695
(GRCh37/hg19)

Genomic View for FANK1-AS1 Gene

Genes around FANK1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FANK1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FANK1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FANK1-AS1 Gene

Proteins for FANK1-AS1 Gene

Post-translational modifications for FANK1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FANK1-AS1 Gene

Domains & Families for FANK1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FANK1-AS1 Gene

Function for FANK1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FANK1-AS1 Gene

Localization for FANK1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FANK1-AS1 Gene

Pathways & Interactions for FANK1-AS1 Gene

SuperPathways for FANK1-AS1 Gene

No Data Available

Interacting Proteins for FANK1-AS1 Gene

Gene Ontology (GO) - Biological Process for FANK1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FANK1-AS1 Gene

Drugs & Compounds for FANK1-AS1 Gene

No Compound Related Data Available

Transcripts for FANK1-AS1 Gene

mRNA/cDNA for FANK1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FANK1-AS1 Gene

No ASD Table

Relevant External Links for FANK1-AS1 Gene

GeneLoc Exon Structure for
FANK1-AS1
ECgene alternative splicing isoforms for
FANK1-AS1

Expression for FANK1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FANK1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FANK1-AS1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with FANK1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FANK1-AS1 Gene

Orthologs for FANK1-AS1 Gene

Evolution for FANK1-AS1 Gene

ENSEMBL:
Gene Tree for FANK1-AS1 (if available)
TreeFam:
Gene Tree for FANK1-AS1 (if available)

No data available for Orthologs for FANK1-AS1 Gene

Paralogs for FANK1-AS1 Gene

No data available for Paralogs for FANK1-AS1 Gene

Variants for FANK1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FANK1-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000329475 -- 125,972,552(-) T/C intron_variant
rs1000685137 -- 125,972,730(-) C/T intron_variant
rs1003414937 -- 125,974,334(-) C/A/T upstream_transcript_variant
rs1003848299 -- 125,974,159(-) A/G upstream_transcript_variant
rs1006899415 -- 125,975,061(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FANK1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2761638 CNV loss 21179565
esv2759788 CNV gain 17122850

Additional Variant Information for FANK1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FANK1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FANK1-AS1 Gene

Disorders for FANK1-AS1 Gene

Additional Disease Information for FANK1-AS1

No disorders were found for FANK1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FANK1-AS1 Gene

Publications for FANK1-AS1 Gene

No publications were found for FANK1-AS1 Gene.

Products for FANK1-AS1 Gene

Sources for FANK1-AS1 Gene

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