Aliases for FAM99B Gene

Subcategory (RNA class) for FAM99B Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for FAM99B Gene

  • Family With Sequence Similarity 99 Member B 2 3 5
  • Family With Sequence Similarity 99 Member B (Non-Protein Coding) 2 3
  • FAM99B 2 168
  • Family With Sequence Similarity 99, Member B (Non-Protein Coding) 2
  • Family With Sequence Similarity 99, Member B 2
  • HSALNG0082137 167
  • NONHSAG007385 92

External Ids for FAM99B Gene

Additional External Ids for FAM99B Gene

Previous GeneCards Identifiers for FAM99B Gene

  • GC00U921691
  • GC11U900702
  • GC11M001662
  • GC11M001704
  • GC11M001496

Summaries for FAM99B Gene

GeneCards Summary for FAM99B Gene

FAM99B (Family With Sequence Similarity 99 Member B) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM99B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM99B Gene

Genomics for FAM99B Gene

GeneHancer (GH) Regulatory Elements for FAM99B Gene

Promoters and enhancers for FAM99B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J001755 Enhancer 0.8 ENCODE dbSUPER 500.7 +1.3 1324 0.8 NR2F2 ZBTB17 ZFHX2 MYC KLF17 HIC1 NR3C1 RXRA CHD2 HNF4A FAM99B IFITM10 CTSD ENSG00000250644
GH11J002131 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.6 -384.7 -384684 21.1 CTCF NRF1 POLR2G USF1 NCOR1 FOS ZIC2 ZBTB10 FOXA1 ZBTB26 IGF2 IGF2-AS RF00483 INS-IGF2 CD81 ENSG00000199550 LSP1 FAM99B LINC02708 KRTAP5-6
GH11J001977 Enhancer 1.4 ENCODE CraniofacialAtlas dbSUPER 11.1 -223.6 -223610 7.5 TCF12 POLR2G NCOR1 PHB2 ZIC2 KDM6A ZBTB10 TCF7 GABPA TRIM28 MRPL23-AS1 LSP1 FAM99B KRTAP5-6 LINC02708 lnc-TNNT3-4 MRPL23 NONHSAG007404.2
GH11J002000 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 10.9 -244.3 -244344 2.1 CTCF USF1 ZBTB10 TARDBP REST RAD21 SMC3 NANOG ZBTB11 ZNF335 H19 MRPL23-AS1 TNNI2 SYT8 FAM99B KRTAP5-6 LINC02708 piR-56684 MRPL23
GH11J002003 Enhancer 0.8 Ensembl ENCODE 10.9 -247.2 -247215 1.5 GABPA CREB1 ZNF316 MAFK NANOG TCF12 NFE2 GATA3 PKNOX1 MAFG TNNI2 SYT8 FAM99B KRTAP5-6 LINC02708 MRPL23-AS1 H19 piR-56684 MRPL23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM99B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FAM99B gene promoter:
  • AhR
  • Arnt
  • Chx10
  • FOXD1
  • FOXO1
  • FOXO1a
  • FOXO4
  • POU2F1
  • POU2F1a
  • S8

Genomic Locations for FAM99B Gene

Genomic Locations for FAM99B Gene
chr11:1,674,348-1,757,422
(GRCh38/hg38)
Size:
83,075 bases
Orientation:
Minus strand
chr11:1,704,499-1,706,859
(GRCh37/hg19)
Size:
2,361 bases
Orientation:
Minus strand

Genomic View for FAM99B Gene

Genes around FAM99B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM99B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM99B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM99B Gene

Proteins for FAM99B Gene

Post-translational modifications for FAM99B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM99B Gene

Domains & Families for FAM99B Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM99B Gene

Function for FAM99B Gene

Phenotypes From GWAS Catalog for FAM99B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM99B Gene

Localization for FAM99B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM99B Gene

Pathways & Interactions for FAM99B Gene

PathCards logo

SuperPathways for FAM99B Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for FAM99B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM99B Gene

Drugs & Compounds for FAM99B Gene

No Compound Related Data Available

Transcripts for FAM99B Gene

mRNA/cDNA for FAM99B Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
6 LncBook transcripts :
6 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM99B Gene

No ASD Table

Relevant External Links for FAM99B Gene

GeneLoc Exon Structure for
FAM99B

Expression for FAM99B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM99B Gene

mRNA differential expression in normal tissues according to GTEx for FAM99B Gene

This gene is overexpressed in Liver (x49.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM99B

SOURCE GeneReport for Unigene cluster for FAM99B Gene:

Hs.117797
genes like me logo Genes that share expression patterns with FAM99B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM99B Gene

Orthologs for FAM99B Gene

Evolution for FAM99B Gene

ENSEMBL:
Gene Tree for FAM99B (if available)
TreeFam:
Gene Tree for FAM99B (if available)

No data available for Orthologs for FAM99B Gene

Paralogs for FAM99B Gene

No data available for Paralogs for FAM99B Gene

Variants for FAM99B Gene

Additional dbSNP identifiers (rs#s) for FAM99B Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM99B Gene

Variant ID Type Subtype PubMed ID
esv1323796 CNV deletion 17803354
esv2743958 CNV deletion 23290073
esv2743959 CNV deletion 23290073
esv2761643 CNV gain 21179565
esv7747 OTHER inversion 19470904
nsv1051627 CNV gain 25217958
nsv1116454 OTHER inversion 24896259
nsv435977 OTHER inversion 17901297
nsv552999 CNV gain 21841781
nsv832049 CNV loss 17160897

Additional Variant Information for FAM99B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM99B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM99B Gene

Disorders for FAM99B Gene

Additional Disease Information for FAM99B

No disorders were found for FAM99B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM99B Gene

Publications for FAM99B Gene

  1. A liver-specific lncRNA, FAM99B, suppresses hepatocellular carcinoma progression through inhibition of cell proliferation, migration, and invasion. (PMID: 31243545) Mo M … Qiu X (Journal of cancer research and clinical oncology 2019) 2 3 54

Products for FAM99B Gene

Sources for FAM99B Gene