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Aliases for FAM99B Gene

Subcategory (RNA class) for FAM99B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM99B Gene

  • Family With Sequence Similarity 99 Member B (Non-Protein Coding) 2 3 5
  • Family With Sequence Similarity 99, Member B (Non-Protein Coding) 2
  • Family With Sequence Similarity 99, Member B 2

External Ids for FAM99B Gene

Previous GeneCards Identifiers for FAM99B Gene

  • GC00U921691
  • GC11U900702
  • GC11M001662
  • GC11M001704
  • GC11M001496

Summaries for FAM99B Gene

GeneCards Summary for FAM99B Gene

FAM99B (Family With Sequence Similarity 99 Member B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM99B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM99B Gene

Genomics for FAM99B Gene

GeneHancer (GH) Regulatory Elements for FAM99B Gene

Promoters and enhancers for FAM99B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I002139 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.6 -460.5 -460510 13 ELF3 RB1 MZF1 BATF ZNF48 RAD21 ZEB1 ZNF335 GLIS2 SCRT2 IGF2 TSSC4 ENSG00000199550 CD81 LSP1 LOC100505570 KRTAP5-6 FAM99B KRTAP5-5 TH
GH11I001770 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11 -86.3 -86319 3.8 HDGF PKNOX1 CLOCK ATF1 ARNT NEUROD1 SIN3A ZBTB7B ARID2 FOS SNORA52 TSPAN4 PIDD1 IFITM10 TNNI2 ENSG00000255142 SYT8 KRTAP5-6 LOC100505570 FAM99B
GH11I001977 Enhancer 1.2 ENCODE dbSUPER 11 -295.4 -295403 7.5 PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B DMAP1 SP5 NFYC ZHX2 MRPL23-AS1 LSP1 KRTAP5-6 FAM99B LOC100505570 GC11P001973 GC11P001986 MRPL23
GH11I001768 Enhancer 0.9 ENCODE dbSUPER 11 -83.4 -83381 0.9 NCOA3 TFAP4 NFIB E2F1 GATA3 EGR1 FOS ZNF687 NR4A1 DACH1 SYT8 TNNI2 KRTAP5-6 FAM99B LOC100505570 CTSD LOC105376517
GH11I002001 Enhancer 0.9 Ensembl ENCODE 10.9 -316.6 -316610 1.7 CTCF RB1 EBF1 RAD21 CC2D1A ZNF335 ARID2 VEZF1 ZNF143 SMC3 H19 TNNI2 SYT8 KRTAP5-6 LOC100505570 FAM99B PIR50683 MRPL23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM99B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FAM99B gene promoter:

Genomic Locations for FAM99B Gene

Genomic Locations for FAM99B Gene
chr11:1,683,269-1,685,629
(GRCh38/hg38)
Size:
2,361 bases
Orientation:
Minus strand
chr11:1,704,499-1,706,859
(GRCh37/hg19)

Genomic View for FAM99B Gene

Genes around FAM99B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM99B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM99B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM99B Gene

Proteins for FAM99B Gene

Post-translational modifications for FAM99B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM99B Gene

Domains & Families for FAM99B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM99B Gene

Function for FAM99B Gene

Phenotypes From GWAS Catalog for FAM99B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM99B Gene

Localization for FAM99B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM99B Gene

Pathways & Interactions for FAM99B Gene

SuperPathways for FAM99B Gene

No Data Available

Interacting Proteins for FAM99B Gene

Gene Ontology (GO) - Biological Process for FAM99B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM99B Gene

Drugs & Compounds for FAM99B Gene

No Compound Related Data Available

Transcripts for FAM99B Gene

mRNA/cDNA for FAM99B Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM99B Gene

Family with sequence similarity 99, member B (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM99B Gene

No ASD Table

Relevant External Links for FAM99B Gene

GeneLoc Exon Structure for
FAM99B
ECgene alternative splicing isoforms for
FAM99B

Expression for FAM99B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM99B Gene

mRNA differential expression in normal tissues according to GTEx for FAM99B Gene

This gene is overexpressed in Liver (x49.5).

NURSA nuclear receptor signaling pathways regulating expression of FAM99B Gene:

FAM99B

SOURCE GeneReport for Unigene cluster for FAM99B Gene:

Hs.117797
genes like me logo Genes that share expression patterns with FAM99B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM99B Gene

Orthologs for FAM99B Gene

Evolution for FAM99B Gene

ENSEMBL:
Gene Tree for FAM99B (if available)
TreeFam:
Gene Tree for FAM99B (if available)

No data available for Orthologs for FAM99B Gene

Paralogs for FAM99B Gene

No data available for Paralogs for FAM99B Gene

Variants for FAM99B Gene

Sequence variations from dbSNP and Humsavar for FAM99B Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000432789 -- 1,685,323(-) G/A intron_variant
rs1000612127 -- 1,684,959(-) C/A intron_variant
rs1000682290 -- 1,686,273(-) T/A upstream_transcript_variant
rs1000742030 -- 1,685,474(-) C/A/G/T non_coding_transcript_variant
rs1001284559 -- 1,683,727(-) T/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM99B Gene

Variant ID Type Subtype PubMed ID
nsv832049 CNV loss 17160897
nsv552999 CNV gain 21841781
nsv435977 OTHER inversion 17901297
nsv1116454 OTHER inversion 24896259
nsv1051627 CNV gain 25217958
esv7747 OTHER inversion 19470904
esv2761643 CNV gain 21179565
esv2743959 CNV deletion 23290073
esv2743958 CNV deletion 23290073
esv1323796 CNV deletion 17803354

Additional Variant Information for FAM99B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM99B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM99B Gene

Disorders for FAM99B Gene

Additional Disease Information for FAM99B

No disorders were found for FAM99B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM99B Gene

Publications for FAM99B Gene

No publications were found for FAM99B Gene.

Products for FAM99B Gene

Sources for FAM99B Gene

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