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Aliases for FAM99A Gene

Subcategory (RNA class) for FAM99A Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FAM99A Gene

  • Family With Sequence Similarity 99 Member A (Non-Protein Coding) 2 3 5
  • Family With Sequence Similarity 99, Member A (Non-Protein Coding) 2
  • Family With Sequence Similarity 99, Member A 2

External Ids for FAM99A Gene

Previous GeneCards Identifiers for FAM99A Gene

  • GC11P001642
  • GC11P001468

Summaries for FAM99A Gene

GeneCards Summary for FAM99A Gene

FAM99A (Family With Sequence Similarity 99 Member A (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM99A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM99A Gene

Genomics for FAM99A Gene

GeneHancer (GH) Regulatory Elements for FAM99A Gene

Promoters and enhancers for FAM99A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I001653 Enhancer 0.7 ENCODE 11.6 -12.5 -12481 0.2 ELF3 CTCF MXI1 SAP130 ARID4B SIN3A ZNF48 ZSCAN9 RAD21 CC2D1A FAM99A GC11P001645 ENSG00000231487
GH11I001654 Enhancer 0.8 ENCODE 8.3 -10.6 -10560 1.5 ELF3 FOXA2 MLX ARID4B THRB ZNF48 RAD21 RARA YY1 SCRT2 FAM99A KRTAP5-AS1 FAM99B ENSG00000231487 GC11P001645
GH11I001680 Enhancer 0.8 ENCODE 7.4 +16.5 16508 2.6 ELF3 FOXA2 MLX ARID4B DNMT3B ZSCAN9 RARA YY1 CREM THAP11 FAM99A FAM99B LOC100505570 ASCL2 GC11P001673 GC11M001664
GH11I001652 Enhancer 0.8 ENCODE 6.9 -12.7 -12721 0.2 ELF3 CTCF MXI1 RB1 SAP130 ARID4B BACH1 SIN3A ZNF384 ZNF48 FAM99A KRTAP5-AS1 GC11P001645 ENSG00000231487
GH11I001669 Enhancer 0.6 ENCODE 7.1 +4.7 4746 1.5 HIC1 ZFHX2 L3MBTL2 ZBTB2 MAX ZNF76 NR2F2 EGR2 KRTAP5-5 LSP1 IFITM10 FAM99A GC11P001673 GC11M001664
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM99A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FAM99A gene promoter:

Genomic Locations for FAM99A Gene

Genomic Locations for FAM99A Gene
chr11:1,665,597-1,667,856
(GRCh38/hg38)
Size:
2,260 bases
Orientation:
Plus strand
chr11:1,686,827-1,689,086
(GRCh37/hg19)

Genomic View for FAM99A Gene

Genes around FAM99A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM99A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM99A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM99A Gene

Proteins for FAM99A Gene

Post-translational modifications for FAM99A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM99A Gene

Domains & Families for FAM99A Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM99A Gene

Function for FAM99A Gene

Phenotypes for FAM99A Gene

GenomeRNAi human phenotypes for FAM99A:
genes like me logo Genes that share phenotypes with FAM99A: view

Animal Model Products

miRNA for FAM99A Gene

miRTarBase miRNAs that target FAM99A

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM99A Gene

Localization for FAM99A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM99A Gene

Pathways & Interactions for FAM99A Gene

SuperPathways for FAM99A Gene

No Data Available

Interacting Proteins for FAM99A Gene

Gene Ontology (GO) - Biological Process for FAM99A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM99A Gene

Drugs & Compounds for FAM99A Gene

No Compound Related Data Available

Transcripts for FAM99A Gene

mRNA/cDNA for FAM99A Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM99A Gene

Family with sequence similarity 99, member A (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM99A Gene

No ASD Table

Relevant External Links for FAM99A Gene

GeneLoc Exon Structure for
FAM99A
ECgene alternative splicing isoforms for
FAM99A

Expression for FAM99A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM99A Gene

mRNA differential expression in normal tissues according to GTEx for FAM99A Gene

This gene is overexpressed in Liver (x52.6).

NURSA nuclear receptor signaling pathways regulating expression of FAM99A Gene:

FAM99A

SOURCE GeneReport for Unigene cluster for FAM99A Gene:

Hs.567908
genes like me logo Genes that share expression patterns with FAM99A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM99A Gene

Orthologs for FAM99A Gene

Evolution for FAM99A Gene

ENSEMBL:
Gene Tree for FAM99A (if available)
TreeFam:
Gene Tree for FAM99A (if available)

No data available for Orthologs for FAM99A Gene

Paralogs for FAM99A Gene

No data available for Paralogs for FAM99A Gene

Variants for FAM99A Gene

Sequence variations from dbSNP and Humsavar for FAM99A Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000290899 -- 1,665,477(+) T/C upstream_transcript_variant
rs1001373406 -- 1,664,239(+) C/G/T upstream_transcript_variant
rs1001865666 -- 1,663,959(+) T/C upstream_transcript_variant
rs1003266815 -- 1,667,358(+) C/G non_coding_transcript_variant
rs1005315171 -- 1,667,170(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM99A Gene

Variant ID Type Subtype PubMed ID
nsv552999 CNV gain 21841781
nsv1116454 OTHER inversion 24896259
nsv1051627 CNV gain 25217958
esv7747 OTHER inversion 19470904
esv2761643 CNV gain 21179565

Additional Variant Information for FAM99A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM99A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM99A Gene

Disorders for FAM99A Gene

Additional Disease Information for FAM99A

No disorders were found for FAM99A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM99A Gene

Publications for FAM99A Gene

No publications were found for FAM99A Gene.

Products for FAM99A Gene

Sources for FAM99A Gene

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