Aliases for FAM99A Gene

Subcategory (RNA class) for FAM99A Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FAM99A Gene

  • Family With Sequence Similarity 99 Member A 2 3 5
  • FAM99A 2 5 165
  • Family With Sequence Similarity 99 Member A (Non-Protein Coding) 2 3
  • Family With Sequence Similarity 99, Member A (Non-Protein Coding) 2
  • Family With Sequence Similarity 99, Member A 2
  • NONHSAG007384.2 91
  • HSALNG0082135 164
  • FLJ42833 2

External Ids for FAM99A Gene

Additional External Ids for FAM99A Gene

Previous GeneCards Identifiers for FAM99A Gene

  • GC11P001642
  • GC11P001468

Summaries for FAM99A Gene

GeneCards Summary for FAM99A Gene

FAM99A (Family With Sequence Similarity 99 Member A) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM99A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM99A Gene

Genomics for FAM99A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM99A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM99A on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the FAM99A gene promoter:
  • FOXD1
  • FOXF2
  • FOXO1
  • FOXO1a
  • FOXO4
  • Ik-2
  • POU2F1
  • POU2F1a
  • S8

Genomic Locations for FAM99A Gene

Genomic Locations for FAM99A Gene
chr11:1,664,169-1,667,856
(GRCh38/hg38)
Size:
3,688 bases
Orientation:
Plus strand
chr11:1,686,827-1,689,086
(GRCh37/hg19)
Size:
2,260 bases
Orientation:
Plus strand

Genomic View for FAM99A Gene

Genes around FAM99A on UCSC Golden Path with GeneCards custom track
FAM99A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FAM99A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM99A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM99A Gene

Proteins for FAM99A Gene

Post-translational modifications for FAM99A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM99A Gene

Domains & Families for FAM99A Gene

Gene Families for FAM99A Gene

genes like me logo Genes that share domains with FAM99A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM99A Gene

Function for FAM99A Gene

Phenotypes From GWAS Catalog for FAM99A Gene

Animal Model Products

CRISPR Products

miRNA for FAM99A Gene

miRTarBase miRNAs that target FAM99A

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for FAM99A

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM99A Gene

Localization for FAM99A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM99A Gene

Pathways & Interactions for FAM99A Gene

PathCards logo

SuperPathways for FAM99A Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM99A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM99A Gene

Drugs & Compounds for FAM99A Gene

No Compound Related Data Available

Transcripts for FAM99A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM99A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E17EC_9606 lncRNA 1432 4

Ensembl: ENST00000382167 (view in UCSC) , ENST00000626916 (view in UCSC) ,

LncBook: HSALNT0171044,

LNCipedia: FAM99A:1,

NONCODE: NONHSAT017414.2,

URS000075DAD5_9606 lncRNA 1430 4

HGNC: 32368,

RefSeq: NR_026643,

LncBook: HSALNT0171045, HSALNT0171046, HSALNT0171047,

LNCipedia: FAM99A:2,

URS00007DC1D1_9606 lncRNA 1989 3

Ensembl: ENST00000538190 (view in UCSC) , ENST00000631114 (view in UCSC) ,

LNCipedia: FAM99A:3,

NONCODE: NONHSAT017415.2,

URS0000EEDFDA_9606 lncRNA 733 1

Ensembl: ENST00000660644 (view in UCSC) ,

URS00009C0AD0_9606 lncRNA 652 2

LncBook: HSALNT0171042,

NONCODE: NONHSAT158719.1,

FAM99A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM99A Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for FAM99A

Alternative Splicing Database (ASD) splice patterns (SP) for FAM99A Gene

No ASD Table

Relevant External Links for FAM99A Gene

GeneLoc Exon Structure for
FAM99A

Expression for FAM99A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM99A Gene

mRNA differential expression in normal tissues according to GTEx for FAM99A Gene

This gene is overexpressed in Liver (x52.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM99A

SOURCE GeneReport for Unigene cluster for FAM99A Gene:

Hs.567908
genes like me logo Genes that share expression patterns with FAM99A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM99A Gene

Orthologs for FAM99A Gene

Evolution for FAM99A Gene

ENSEMBL:
Gene Tree for FAM99A (if available)
TreeFam:
Gene Tree for FAM99A (if available)

No data available for Orthologs for FAM99A Gene

Paralogs for FAM99A Gene

No data available for Paralogs for FAM99A Gene

Variants for FAM99A Gene

Additional dbSNP identifiers (rs#s) for FAM99A Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM99A Gene

Variant ID Type Subtype PubMed ID
esv2761643 CNV gain 21179565
esv7747 OTHER inversion 19470904
nsv1051627 CNV gain 25217958
nsv1116454 OTHER inversion 24896259
nsv552999 CNV gain 21841781

Additional Variant Information for FAM99A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM99A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM99A Gene

Disorders for FAM99A Gene

No disorders were found for FAM99A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM99A Gene

Publications for FAM99A Gene

  1. lncRNA FAM99A is downregulated in preeclampsia and exerts a regulatory effect on trophoblast cell invasion, migration and apoptosis. (PMID: 31173227) He T … Cao Y (Molecular medicine reports 2019) 2 3

Products for FAM99A Gene

Sources for FAM99A Gene