FAM90A26 Gene (Protein Coding)

Family With Sequence Similarity 90 Member A26

GC04P009178
GIFtS:
17
See more...

Aliases for FAM90A26 Gene

Aliases for FAM90A26 Gene

  • Family With Sequence Similarity 90 Member A26 2 3 5
  • Family With Sequence Similarity 90, Member A26, Pseudogene 2 3
  • Putative Protein FAM90A26 3 4
  • FAM90A26P 3 4
  • Family With Sequence Similarity 90, Member A26 2
  • FAM90A26 5

External Ids for FAM90A26 Gene

Previous HGNC Symbols for FAM90A26 Gene

  • FAM90A26P

Summaries for FAM90A26 Gene

GeneCards Summary for FAM90A26 Gene

FAM90A26 (Family With Sequence Similarity 90 Member A26) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding. An important paralog of this gene is FAM90A23P.

Additional gene information for FAM90A26 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM90A26 Gene

Genomics for FAM90A26 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for FAM90A26 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J009171 Enhancer 0.2 Ensembl 600.7 +0.1 92 1.4 ALG1L14P FAM90A26 NONHSAG037451.2 FAM86KP OR7E85P USP17L10 ENSG00000288075
GH04J009151 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.4 -17.5 -17490 3.4 CREB1 PRDM10 ZNF629 TFE3 RFX1 IKZF1 ZNF692 RBFOX2 RXRB PATZ1 FAM86KP LOC105369250 piR-41981-005 piR-56774-004 SNRPCP16 FAM90A26 ENSG00000288075 HMX1
GH04J009166 Enhancer 0.3 Ensembl 0.7 -4.2 -4209 0.8 CTCF piR-54151-004 ALG1L14P FAM90A26 piR-57133-445 FAM86KP ENSG00000288075 HMX1
GH04J009134 Enhancer 0.6 Ensembl 0.3 -35.1 -35108 2.2 ZNF600 SCRT2 ZBTB44 ZNF10 ZEB1 NFIC ZNF184 NFIB PRDM6 ZMYM3 FAM86KP piR-31470-349 piR-62065-003 LOC105369250 FAM90A26 ENPP7P10 ENSG00000288075 HMX1
GH04J009149 Enhancer 0.5 Ensembl 0.4 -21.1 -21109 0.6 NFE2 FOS ATF3 ZNF398 BCL6B piR-50444-334 FAM86KP LOC105369250 piR-57133-444 FAM90A26 ENSG00000288075 HMX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM90A26 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for FAM90A26

Genomic Locations for FAM90A26 Gene

Genomic Locations for FAM90A26 Gene
chr4:9,170,409-9,176,730
(GRCh38/hg38)
Size:
6,322 bases
Orientation:
Plus strand
chr4:9,172,135-9,178,453
(GRCh37/hg19)
Size:
6,319 bases
Orientation:
Plus strand

Genomic View for FAM90A26 Gene

Genes around FAM90A26 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM90A26 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM90A26 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM90A26 Gene

Proteins for FAM90A26 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for FAM90A26 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    D6RGX4-F90AP_HUMAN
    Recommended name:
    Putative protein FAM90A26
    Protein Accession:
    D6RGX4

    Protein attributes for FAM90A26 Gene

    Size:
    464 amino acids
    Molecular mass:
    49883 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM90A26 Gene

Protein Expression for FAM90A26 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for FAM90A26 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM90A26 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM90A26 Gene

Domains & Families for FAM90A26 Gene

Gene Families for FAM90A26 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for FAM90A26 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

D6RGX4

UniProtKB/Swiss-Prot:

F90AP_HUMAN :
  • Belongs to the FAM90 family.
Family:
  • Belongs to the FAM90 family.
genes like me logo Genes that share domains with FAM90A26: view

No data available for Suggested Antigen Peptide Sequences for FAM90A26 Gene

Function for FAM90A26 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM90A26 Gene

Localization for FAM90A26 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM90A26 gene
Compartment Confidence
nucleus 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM90A26 Gene

Pathways & Interactions for FAM90A26 Gene

PathCards logo

SuperPathways for FAM90A26 Gene

No Data Available

Interacting Proteins for FAM90A26 Gene

STRING Interaction Network Preview (showing top 1 STRING interactants - click image to see details)
STRING Interaction Network
Selected Interacting proteins: ENSP00000421131 D6RGX4-F90AP_HUMAN for FAM90A26 Gene via STRING IID

GPS-Prot Interaction Network for FAM90A26

Gene Ontology (GO) - Biological Process for FAM90A26 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM90A26 Gene

Drugs & Compounds for FAM90A26 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM90A26 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for FAM90A26 Gene

1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM90A26 Gene

No ASD Table

Relevant External Links for FAM90A26 Gene

GeneLoc Exon Structure for
FAM90A26

Expression for FAM90A26 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM90A26 Gene

mRNA expression in normal human tissues for FAM90A26 Gene
mRNA expression by GTEx for FAM90A26 Gene

Protein differential expression in normal tissues from HIPED for FAM90A26 Gene

This gene is overexpressed in Heart (68.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM90A26 Gene



Protein tissue co-expression partners for FAM90A26 Gene

- Elite partner
genes like me logo Genes that share expression patterns with FAM90A26: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM90A26 Gene

Orthologs for FAM90A26 Gene

This gene was present in the common ancestor of mammals.

Orthologs for FAM90A26 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia FAM90A26 31
  • 88 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia -- 31
  • 37 (a)
 ManyToMany
-- 31
  • 36 (a)
 ManyToMany
-- 31
  • 35 (a)
 ManyToMany
-- 31
  • 34 (a)
 ManyToMany
Cow
(Bos Taurus)
 Mammalia -- 31
  • 33 (a)
 ManyToMany
-- 31
  • 32 (a)
 ManyToMany
Mouse
(Mus musculus)
 Mammalia 4932442L08Rik 31
  • 30 (a)
 ManyToMany
C86695 31
  • 26 (a)
 ManyToMany
Species where no ortholog for FAM90A26 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for FAM90A26 Gene

ENSEMBL:
Gene Tree for FAM90A26 (if available)
TreeFam:
Gene Tree for FAM90A26 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for FAM90A26: view image

Paralogs for FAM90A26 Gene

Paralogs for FAM90A26 Gene

(19) SIMAP similar genes for FAM90A26 Gene using alignment to 1 proteins:

  • D6RGX4_HUMAN

Pseudogenes.org Pseudogenes for FAM90A26 Gene

genes like me logo Genes that share paralogs with FAM90A26: view

Variants for FAM90A26 Gene

Additional dbSNP identifiers (rs#s) for FAM90A26 Gene

Variation tolerance for FAM90A26 Gene

Gene Damage Index Score: 8.62; 86.26% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for FAM90A26 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM90A26

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Structural Variations from Database of Genomic Variants (DGV) for FAM90A26 Gene

Disorders for FAM90A26 Gene

Additional Disease Information for FAM90A26

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for FAM90A26 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM90A26 Gene

Publications for FAM90A26 Gene

  1. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 4

ExternalLinks

View latest publications for FAM90A26 gene in Mastermind

Products for FAM90A26 Gene

Sources for FAM90A26 Gene