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Aliases for FAM86EP Gene

Aliases for FAM86EP Gene

  • Family With Sequence Similarity 86 Member E, Pseudogene 2 5
  • Family With Sequence Similarity 86, Member E, Pseudogene 2
  • Family With Sequence Similarity 86, Member A Pseudogene 3

External Ids for FAM86EP Gene

Summaries for FAM86EP Gene

GeneCards Summary for FAM86EP Gene

FAM86EP (Family With Sequence Similarity 86 Member E, Pseudogene) is a Pseudogene.

Additional gene information for FAM86EP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM86EP Gene

Genomics for FAM86EP Gene

GeneHancer (GH) Regulatory Elements for FAM86EP Gene

Promoters and enhancers for FAM86EP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I003953 Promoter/Enhancer 1.5 Ensembl ENCODE 562.1 +0.4 408 4 HDGF PKNOX1 CLOCK ATF1 MLX ARID4B SIN3A GLIS2 ZNF207 FOS FAM86EP ENSG00000253917 GC04P003954 LOC105374358 ENSG00000271977 ZBTB49 ENPP7P9 STX18 TMEM128
GH04I004540 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 13.2 -586.4 -586435 2.7 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 STX18-AS1 STX18 TMEM128 FAM86EP NSG1 ZBTB49 RPS7P15
GH04I003531 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 13.2 +423.2 423157 1.7 ARID4B SIN3A DMAP1 ZNF48 YY1 ETS1 POLR2B GLIS2 ZNF143 SP3 LRPAP1 FAM86EP ENSG00000261643 PIR35299
GH04I003924 Enhancer 0.7 FANTOM5 ENCODE 6.5 +27.3 27294 6.4 NFIC NFIB PRDM1 SPI1 ENSG00000271977 FAM86EP ENPP7P9 LRPAP1 ADRA2C LOC100420818 ALG1L7P ENSG00000253917
GH04I004031 Enhancer 0.6 Ensembl ENCODE 4.7 -77.4 -77432 1.7 RFX1 RFX3 LOC101928217 ENPP7P9 ENSG00000271977 FAM86EP GC04P004042 GC04M004021 LOC100130459
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM86EP on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM86EP Gene

Genomic Locations for FAM86EP Gene
chr4:3,941,760-3,955,428
(GRCh38/hg38)
Size:
13,669 bases
Orientation:
Minus strand
chr4:3,943,487-3,957,148
(GRCh37/hg19)

Genomic View for FAM86EP Gene

Genes around FAM86EP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM86EP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM86EP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM86EP Gene

Proteins for FAM86EP Gene

Post-translational modifications for FAM86EP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM86EP Gene

Domains & Families for FAM86EP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM86EP Gene

Function for FAM86EP Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM86EP Gene

Localization for FAM86EP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM86EP Gene

Pathways & Interactions for FAM86EP Gene

SuperPathways for FAM86EP Gene

No Data Available

Interacting Proteins for FAM86EP Gene

Gene Ontology (GO) - Biological Process for FAM86EP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM86EP Gene

Drugs & Compounds for FAM86EP Gene

No Compound Related Data Available

Transcripts for FAM86EP Gene

mRNA/cDNA for FAM86EP Gene

(2) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM86EP Gene

Family with sequence similarity 86, member A pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM86EP Gene

No ASD Table

Relevant External Links for FAM86EP Gene

GeneLoc Exon Structure for
FAM86EP
ECgene alternative splicing isoforms for
FAM86EP

Expression for FAM86EP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM86EP Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM86EP Gene:

FAM86EP

SOURCE GeneReport for Unigene cluster for FAM86EP Gene:

Hs.591720
genes like me logo Genes that share expression patterns with FAM86EP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM86EP Gene

Orthologs for FAM86EP Gene

Evolution for FAM86EP Gene

ENSEMBL:
Gene Tree for FAM86EP (if available)
TreeFam:
Gene Tree for FAM86EP (if available)

No data available for Orthologs for FAM86EP Gene

Paralogs for FAM86EP Gene

No data available for Paralogs for FAM86EP Gene

Variants for FAM86EP Gene

Sequence variations from dbSNP and Humsavar for FAM86EP Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000015118 -- 3,943,980(-) G/A intron_variant
rs1000084471 -- 3,947,047(-) G/A/T intron_variant
rs1000199218 -- 3,953,409(-) G/T intron_variant
rs1000239558 -- 3,956,416(-) G/A upstream_transcript_variant
rs10003461 -- 3,955,788(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM86EP Gene

Variant ID Type Subtype PubMed ID
nsv997980 CNV gain 25217958
nsv967721 CNV duplication 23825009
nsv517008 CNV gain+loss 19592680
nsv1000167 CNV loss 25217958
esv3599441 CNV gain 21293372
esv3599440 CNV loss 21293372
esv3599439 CNV loss 21293372
esv3575675 CNV gain 25503493
esv3569248 CNV loss 25503493
esv34196 OTHER inversion 12058347
esv2763838 CNV gain+loss 21179565
esv2760820 CNV loss 21179565
esv2759219 CNV gain 17122850
esv2726960 CNV deletion 23290073
dgv5090n100 CNV gain 25217958
dgv5089n100 CNV loss 25217958
dgv5088n100 CNV gain 25217958
dgv5087n100 CNV gain+loss 25217958
dgv5085n100 CNV gain 25217958
dgv5084n100 CNV loss 25217958

Additional Variant Information for FAM86EP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM86EP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM86EP Gene

Disorders for FAM86EP Gene

Additional Disease Information for FAM86EP

No disorders were found for FAM86EP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM86EP Gene

Publications for FAM86EP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for FAM86EP Gene

Sources for FAM86EP Gene

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