Aliases for FAM85A Gene

Data sources for FAM85A Gene:

RNA type for FAM85A Gene

lncRNA

Aliases for FAM85A Gene

  • Family With Sequence Similarity 85 Member A (HGNC, NCBI Entrez Gene)
  • Family With Sequence Similarity 85, Member A (HGNC)

External Ids for FAM85A Gene

Previous GeneCards Identifiers for FAM85A Gene

  • GC08U900641
  • GC08P012052

Summaries for FAM85A Gene

GeneCards Summary for FAM85A Gene

FAM85A (Family With Sequence Similarity 85 Member A) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM85A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM85A Gene

Genomics for FAM85A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM85A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J012185 Enhancer 0.2 Ensembl 250.7 0.0 -35 1.8 FAM85A FAM66A piR-54151-006 FAM86B1 lnc-USP17L2-3 USP17L2
GH08J012193 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +8.7 8665 4 IKZF1 ZNF580 NFIC ZEB1 MNT KLF7 KLF9 NBN SP2 SAP130 ENSG00000255495 FAM86B1 piR-41981-007 lnc-USP17L2-3 FAM85A USP17L2
GH08J012190 Enhancer 0.2 Ensembl 0.7 +4.6 4565 0.2 piR-55279-004 FAM85A piR-41981-007 lnc-USP17L2-3 FAM86B1 USP17L2
GH08J012188 Enhancer 0.2 Ensembl 0.7 +2.9 2940 0.6 piR-55279-004 FAM85A FAM86B1 lnc-USP17L2-3 USP17L2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM85A on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM85A Gene

Latest Assembly
chr8:12,185,736-12,202,526
(GRCh38/hg38)
Size:
16,791 bases
Orientation:
Plus strand

Previous Assembly
chr8:12,043,245-12,060,035
(GRCh37/hg19 by Entrez Gene)
Size:
16,791 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):1,140,409-1,150,368 (-)

Genomic View for FAM85A Gene

Genes around FAM85A on UCSC Golden Path with GeneCards custom track
FAM85A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FAM85A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM85A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM85A Gene

Proteins for FAM85A Gene

Post-translational modifications for FAM85A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM85A Gene

Domains & Families for FAM85A Gene

Gene Families for FAM85A Gene

genes like me logo Genes that share domains with FAM85A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM85A Gene

Function for FAM85A Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM85A Gene

Localization for FAM85A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM85A Gene

Pathways & Interactions for FAM85A Gene

PathCards logo

SuperPathways for FAM85A Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM85A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM85A Gene

Drugs & Compounds for FAM85A Gene

No Compound Related Data Available

Transcripts for FAM85A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM85A Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC43AD_9606 lncRNA 1848 1

RefSeq: NR_146925,

URS00019AEC1F_9606 lncRNA 1259 1

ENA: MN298476.1:1..1259:ncRNA,

URS00019BB3B8_9606 lncRNA 1216 1

ENA: MN298475.1:1..1216:ncRNA,

FAM85A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for FAM85A Gene

No ASD Table

Relevant External Links for FAM85A Gene

GeneLoc Exon Structure for
FAM85A

No data available for mRNA/cDNA for FAM85A Gene

Expression for FAM85A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM85A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM85A

SOURCE GeneReport for Unigene cluster for FAM85A Gene:

Hs.745150
genes like me logo Genes that share expression patterns with FAM85A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM85A Gene

Orthologs for FAM85A Gene

No data available for Orthologs and Evolution for FAM85A Gene

Paralogs for FAM85A Gene

No data available for Paralogs for FAM85A Gene

Variants for FAM85A Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FAM85A Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for FAM85A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM85A
Leiden Open Variation Database (LOVD)
FAM85A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM85A Gene

Disorders for FAM85A Gene

Additional Disease Information for FAM85A

No disorders were found for FAM85A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM85A Gene

Publications for FAM85A Gene

No publications were found for FAM85A Gene.

Products for FAM85A Gene

Sources for FAM85A Gene